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Report for CCDS81341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81341.1 Public Homo sapiens 1 LRRC7 24 110 108 CCDS HistoryNCBI Gene:57554Re-query CCDS DB by CCDS ID:81341.1Re-query CCDS DB by GeneID:57554See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81341.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310961.9 ENSP00000309245.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000310961.9Link to Ensembl Protein Viewer:ENSP00000309245.4Re-query CCDS DB by Nucleotide ID:ENST00000310961Re-query CCDS DB by Protein ID:ENSP00000309245
Original member Current member NCBI NM_001330635.3 NP_001317564.1 Accepted alive Link to Nucleotide Sequence:NM_001330635.3Link to Protein Sequence:NP_001317564.1Re-query CCDS DB by Nucleotide ID:NM_001330635Re-query CCDS DB by Protein ID:NP_001317564Link to BLAST:NP_001317564.1

Chromosomal Locations for CCDS 81341.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 69716218 69716218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69760191 69760393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69792043 69792160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69825748 69825826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69834780 69834869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69838227 69838283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69931507 69931570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69980379 69980453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69986242 69986386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69994561 69994633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70011797 70011926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70012974 70013089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70016465 70016534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70018719 70018818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70021005 70021129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70023126 70023374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70028171 70028371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70036121 70036232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70036444 70036624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70038113 70039793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70053026 70053145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70076077 70076298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70089727 70089819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70107752 70107826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70121780 70121887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4488 nt):
ATGCAGTGCCTGGAGATGACCACCAAACGGAAAATCATCGGCCGTCTGGTGCCATGCCGATGTTTCCGAG
GTGAAGAAGAAATCATCTCAGTTTTAGATTACTCCCACTGCAGTCTTCAGCAGGTGCCAAAGGAGGTCTT
TAACTTCGAACGAACATTAGAGGAGCTTTATCTAGATGCCAATCAAATTGAAGAACTACCCAAGCAATTG
TTCAACTGTCAAGCTCTACGAAAACTAAGTATTCCTGATAACGACCTTTCAAATCTGCCAACCACTATTG
CTAGTTTAGTTAATCTTAAAGAACTCGACATCAGTAAAAATGGTGTACAAGAATTTCCAGAAAACATAAA
GTGCTGTAAGTGTTTAACAATTATTGAAGCCAGTGTCAATCCCATTTCTAAACTACCTGATGGCTTCACA
CAGCTCCTAAACCTGACCCAGCTCTACCTGAATGACGCCTTTCTTGAATTTCTTCCAGCCAATTTTGGAA
GACTTGTCAAATTGCGGATCTTGGAGTTAAGAGAAAATCACTTGAAAACTCTACCAAAGTCAATGCACAA
ACTGGCCCAGTTGGAAAGACTTGACCTAGGCAATAATGAATTCGGTGAGCTGCCTGAAGTTCTGGATCAA
ATACAAAATTTGAGGGAGTTATGGATGGATAATAATGCATTACAAGTGTTACCTGGGTCTATAGGGAAGT
TAAAGATGTTGGTATACCTGGATATGTCAAAAAACAGAATAGAAACAGTTGACATGGACATTTCTGGATG
TGAAGCCCTTGAGGACCTCTTATTGTCATCCAATATGTTGCAACAATTGCCTGATTCTATAGGACTTTTG
AAAAAACTAACAACTCTAAAAGTAGATGACAATCAACTTACAATGCTACCCAATACAATTGGAAATTTAT
CTTTATTAGAAGAATTTGACTGTAGCTGTAATGAACTGGAGTCACTACCTTCTACTATTGGCTACCTTCA
TAGTCTTCGGACATTAGCAGTTGATGAGAATTTCCTTCCAGAATTACCCAGAGAAATTGGAAGTTGTAAG
AATGTAACAGTCATGTCTCTACGCTCCAACAAATTAGAATTTCTTCCTGAAGAGATTGGACAGATGCAGA
AACTAAGAGTCCTAAATTTGAGTGACAACAGATTGAAGAATTTACCATTCTCATTTACCAAACTTAAAGA
GCTTGCAGCTTTGTGGCTTTCTGACAATCAGTCCAAAGCCCTTATCCCTTTACAAACAGAAGCCCATCCA
GAAACAAAGCAAAGAGTATTGACTAACTACATGTTTCCCCAGCAGCCTCGTGGTGATGAAGATTTCCAGT
CAGACAGTGACAGCTTTAACCCTACACTGTGGGAAGAGCAGAGACAACAACGCATGACTGTTGCCTTTGA
ATTTGAAGACAAAAAAGAAGATGACGAAAATGCTGGGAAAGTTAAGGATCTCTCCTGCCAAGCCCCCTGG
GAAAGGGGCCAGCGTGGGATTACTCTCCAACCTGCCAGACTGTCTGGCGATTGCTGCACACCATGGGCCA
GGTGTGATCAGCAGATCCAAGATATGCCCGTCCCCCAGAATGACCCACAGCTGGCATGGGGTTGTATAAG
TGGCCTCCAGCAGGAAAGGAGCATGTGTACTCCATTGCCAGTTGCAGCACAATCCACCACTCTTCCCTCT
CTAAGTGGCAGACAGGTTGAAATAAACCTAAAACGATATCCAACTCCTTACCCAGAGGATTTAAAGAATA
TGGTAAAATCTGTTCAAAATTTGGTGGGTAAGCCAAGCCATGGAGTGCGTGTTGAGAATTCAAATCCAAC
TGCTAACACGGAGCAAACTGTGAAAGAAAAATATGAACACAAGTGGCCGGTAGCCCCAAAGGAGATTACA
GTGGAGGATTCTTTTGTTCATCCAGCTAATGAAATGAGGATTGGGGAACTTCACCCTTCATTAGCTGAGA
CCCCTCTGTACCCACCCAAACTTGTTCTGCTAGGGAAGGACAAAAAAGAATCAACTGATGAGTCTGAAGT
TGACAAAACTCACTGTCTGAATAACAGTGTTTCCTCAGGCACTTACTCAGACTACTCGCCTTCCCAGGCT
TCCTCAGGATCCTCTAATACCCGGGTTAAAGTGGGGTCCTTGCAGACAACAGCTAAAGATGCAGTACATA
ATTCTTTGTGGGGTAACAGGATTGCACCATCTTTCCCACAGCCTCTTGATTCAAAGCCATTACTCAGCCA
GCGGGAGGCTGTTCCCCCAGGCAATATACCACAGCGTCCTGACCGGCTGCCCATGAGTGATACTTTCACT
GACAACTGGACTGATGGCTCGCATTATGACAACACAGGGTTTGTTGCTGAGGAAACCACAGCCGAGAATG
CCAACAGTAATCCTCTCTTAAGTTCGAAATCTAGAAGCACATCTTCGCATGGACGCAGGCCTTTGATCAG
GCAAGACAGGATTGTTGGTGTTCCCCTGGAACTCGAGCAGTCTACACACAGACACACACCAGAAACAGAA
GTGCCTCCTTCCAATCCTTGGCAGAATTGGACCAGAACCCCTAGTCCGTTTGAAGACAGGACCGCTTTTC
CTTCCAAATTAGAGACAACCCCCACTACCAGCCCATTGCCTGAAAGGAAAGAACATATAAAGGAATCTAC
TGAAATACCTAGTCCTTTTTCTCCAGGCGTACCATGGGAGTATCATGATTCCAATCCCAACAGGAGTCTT
AGTAATGTCTTTTCTCAAATCCACTGCCGCCCGGAATCTTCTAAAGGTGTTATTTCAATTAGCAAAAGCA
CAGAGAGGCTTTCCCCCCTAATGAAAGATATCAAGTCTAATAAATTCAAAAAGTCACAGAGTATCGATGA
GATTGACATTGGTACATATAAGGTGTATAACATACCATTAGAAAACTATGCTTCTGGGAGTGATCACTTA
GGAAGCCACGAACGACCGGATAAGATGCTGGGACCAGAGCATGGTATGTCCAGTATGTCTCGAAGCCAGT
CAGTCCCAATGCTGGATGATGAGATGCTCACCTACGGAAGTAGTAAGGGGCCACAACAACAAAAAGCTTC
TATGACAAAAAAAGTCTATCAGTTTGACCAAAGCTTCAATCCTCAAGGATCAGTGGAAGTGAAAGCCGAA
AAGAGGATACCACCCCCTTTTCAACACAATCCCGAGTACGTGCAACAGGCCAGCAAAAACATCGCCAAGG
ATTTGATTAGTCCTAGAGCTTACAGAGGATACCCACCGATGGAGCAAATGTTTTCATTTTCTCAGCCATC
TGTGAATGAGGATGCTGTGGTGAATGCCCAGTTCGCAAGCCAAGGGGCCAGGGCGGGCTTCCTGAGAAGG
GCCGACTCCCTGGTGAGCGCCACAGAAATGGCCATGTTTAGAAGGGTCAATGAGCCTCATGAGCTGCCCC
CAACTGATAGGTACGGCAGACCCCCATATAGGGGAGGGCTGGATCGCCAAAGCAGCGTTACAGTGACTGA
GTCCCAGTTCCTGAAAAGGAATGGCAGGTATGAAGATGAACACCCTTCATATCAAGAAGTGAAAGCTCAG
GCGGGAAGTTTTCCGGTTAAAAACCTTACCCAAAGGAGGCCATTGTCTGCGAGAAGCTACAGTACAGAGA
GTTACGGTGCCTCCCAAACCAGGCCAGTTTCAGCTAGGCCTACTATGGCAGCTCTTTTGGAAAAAATACC
ATCTGACTATAACTTGGGTAACTATGGTGACAAGCCATCAGATAACAGTGATTTAAAGACGAGGCCTACT
CCTGTGAAGGGAGAGGAGAGCTGTGGTAAAATGCCTGCAGACTGGAGACAACAGCTGCTTAGACATATAG
AAGCTAGACGGTTAGACAGGACCCCGTCCCAGCAAAGCAACATTTTAGACAATGGACAAGAAGATGTATC
TCCTAGTGGCCAATGGAATCCTTATCCACTTGGGAGGCGGGATGTACCTCCGGACACCATTACTAAGAAG
GCAGGCAGCCACATCCAGACGTTGATGGGGTCCCAAAGCCTTCAGCATCGCAGCCGGGAGCAGCAGCCGT
ATGAAGGAAATATAAACAAAGTGACCATCCAGCAATTTCAGTCACCATTGCCTATTCAGATCCCCTCTTC
ACAGGCCACCCGGGGACCTCAGCCTGGACGGTGCTTAATTCAAACTAAAGGGCAAAGGAGTATGGATGGA
TATCCAGAGCAGTTTTGTGTGAGAATAGAAAAGAATCCTGGCCTTGGATTTAGTATCAGTGGTGGAATTA
GTGGACAAGGAAATCCATTCAAACCTTCTGACAAGGGTATCTTTGTTACTAGGGTTCAGCCTGATGGGCC
AGCATCAAACCTACTGCAGCCTGGTGATAAGATCCTTCAGGCAAATGGACACAGTTTTGTACATATGGAA
CATGAAAAAGCTGTATTACTACTGAAGAGTTTCCAGAACACAGTAGACCTAGTTATTCAACGTGAGCTTA
CTGTCTAA

Translation (1495 aa):
MQCLEMTTKRKIIGRLVPCRCFRGEEEIISVLDYSHCSLQQVPKEVFNFERTLEELYLDANQIEELPKQL
FNCQALRKLSIPDNDLSNLPTTIASLVNLKELDISKNGVQEFPENIKCCKCLTIIEASVNPISKLPDGFT
QLLNLTQLYLNDAFLEFLPANFGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFGELPEVLDQ
IQNLRELWMDNNALQVLPGSIGKLKMLVYLDMSKNRIETVDMDISGCEALEDLLLSSNMLQQLPDSIGLL
KKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPSTIGYLHSLRTLAVDENFLPELPREIGSCK
NVTVMSLRSNKLEFLPEEIGQMQKLRVLNLSDNRLKNLPFSFTKLKELAALWLSDNQSKALIPLQTEAHP
ETKQRVLTNYMFPQQPRGDEDFQSDSDSFNPTLWEEQRQQRMTVAFEFEDKKEDDENAGKVKDLSCQAPW
ERGQRGITLQPARLSGDCCTPWARCDQQIQDMPVPQNDPQLAWGCISGLQQERSMCTPLPVAAQSTTLPS
LSGRQVEINLKRYPTPYPEDLKNMVKSVQNLVGKPSHGVRVENSNPTANTEQTVKEKYEHKWPVAPKEIT
VEDSFVHPANEMRIGELHPSLAETPLYPPKLVLLGKDKKESTDESEVDKTHCLNNSVSSGTYSDYSPSQA
SSGSSNTRVKVGSLQTTAKDAVHNSLWGNRIAPSFPQPLDSKPLLSQREAVPPGNIPQRPDRLPMSDTFT
DNWTDGSHYDNTGFVAEETTAENANSNPLLSSKSRSTSSHGRRPLIRQDRIVGVPLELEQSTHRHTPETE
VPPSNPWQNWTRTPSPFEDRTAFPSKLETTPTTSPLPERKEHIKESTEIPSPFSPGVPWEYHDSNPNRSL
SNVFSQIHCRPESSKGVISISKSTERLSPLMKDIKSNKFKKSQSIDEIDIGTYKVYNIPLENYASGSDHL
GSHERPDKMLGPEHGMSSMSRSQSVPMLDDEMLTYGSSKGPQQQKASMTKKVYQFDQSFNPQGSVEVKAE
KRIPPPFQHNPEYVQQASKNIAKDLISPRAYRGYPPMEQMFSFSQPSVNEDAVVNAQFASQGARAGFLRR
ADSLVSATEMAMFRRVNEPHELPPTDRYGRPPYRGGLDRQSSVTVTESQFLKRNGRYEDEHPSYQEVKAQ
AGSFPVKNLTQRRPLSARSYSTESYGASQTRPVSARPTMAALLEKIPSDYNLGNYGDKPSDNSDLKTRPT
PVKGEESCGKMPADWRQQLLRHIEARRLDRTPSQQSNILDNGQEDVSPSGQWNPYPLGRRDVPPDTITKK
AGSHIQTLMGSQSLQHRSREQQPYEGNINKVTIQQFQSPLPIQIPSSQATRGPQPGRCLIQTKGQRSMDG
YPEQFCVRIEKNPGLGFSISGGISGQGNPFKPSDKGIFVTRVQPDGPASNLLQPGDKILQANGHSFVHME
HEKAVLLLKSFQNTVDLVIQRELTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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