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Report for CCDS81298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81298.1 Public Homo sapiens 1 PHC2 24 110 108 CCDS HistoryNCBI Gene:1912Re-query CCDS DB by CCDS ID:81298.1Re-query CCDS DB by GeneID:1912See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373422.8 ENSP00000362521.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373422.8Link to Ensembl Protein Viewer:ENSP00000362521.4Re-query CCDS DB by Nucleotide ID:ENST00000373422Re-query CCDS DB by Protein ID:ENSP00000362521
Original member Current member EBI ENST00000431992.6 ENSP00000389436.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431992.6Link to Ensembl Protein Viewer:ENSP00000389436.2Re-query CCDS DB by Nucleotide ID:ENST00000431992Re-query CCDS DB by Protein ID:ENSP00000389436
Original member Current member NCBI NM_001330488.2 NP_001317417.1 Accepted alive Link to Nucleotide Sequence:NM_001330488.2Link to Protein Sequence:NP_001317417.1Re-query CCDS DB by Nucleotide ID:NM_001330488Re-query CCDS DB by Protein ID:NP_001317417Link to BLAST:NP_001317417.1
Original member Current member NCBI NM_001385122.1 NP_001372051.1 Accepted alive Link to Nucleotide Sequence:NM_001385122.1Link to Protein Sequence:NP_001372051.1Re-query CCDS DB by Nucleotide ID:NM_001385122Re-query CCDS DB by Protein ID:NP_001372051Link to BLAST:NP_001372051.1

Chromosomal Locations for CCDS 81298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 33324865 33325019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33328870 33329146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33330071 33330212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33331348 33331462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33332275 33332404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33334090 33334292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33354401 33354566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33354838 33355253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33367116 33367428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33370421 33370585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33371017 33371094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33372289 33372447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33375366 33375539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2493 nt):
ATGGAGAATGAGCTGCCAGTCCCACATACATCTAGCAGTGCCTGTGCCACCAGCAGTACCAGCGGGGCCA
GTAGCAGCAGTGGCTGCAACAACAGCAGCAGTGGTGGAAGTGGCCGCCCCACCGGGCCCCAGATTTCTGT
GTACAGTGGTATTCCAGACCGGCAGACCGTGCAGGTGATCCAGCAGGCCCTGCACAGACAGCCCAGCACG
GCCGCTCAGTACCTGCAGCAGATGTACGCCGCCCAGCAGCAGCACCTCATGCTGCAGACCGCGGCGCTCC
AGCAGCAGCACCTCAGCAGCGCCCAGCTCCAGAGCCTGGCAGCCGTACAGCAGGCAAGCCTGGTATCCAA
TAGACAAGGAAGCACTTCAGGCAGCAATGTGTCTGCGCAGGCCCCGGCCCAGTCATCTTCGATCAACCTG
GCAGCCTCCCCAGCAGCAGCCCAGCTCCTCAACCGGGCCCAGAGTGTGAACTCTGCAGCAGCCTCAGGCA
TCGCTCAGCAGGCTGTGCTCTTGGGCAACACGTCTTCCCCAGCCCTGACTGCAAGCCAAGCACAGATGTA
TCTGAGGGCACAGATGGTACAGAACTTGACCCTCCGAACACAGCAGACACCAGCGGCAGCAGCCTCGGGC
CCCACCCCCACTCAGCCTGTCCTGCCCAGCTTGGCCCTGAAACCCACGCCGGGCGGTAGCCAGCCTCTGC
CTACCCCAGCACAGAGCAGAAATACTGCTCAGGCTTCCCCTGCAGGTGCCAAGCCTGGCATAGCTGACAG
TGTGATGGAGCCACACAAGAAAGGAGATGGCAACAGCAGTGTGCCAGGGAGCATGGAAGGCCGGGCTGGG
CTCAGCCGGACGGTTCCTGCTGTGGCTGCCCACCCCCTCATTGCACCAGCCTATGCTCAGCTGCAGCCAC
ACCAGCTCCTCCCACAGCCATCCTCAAAGCACCTGCAGCCCCAATTTGTGATCCAGCAGCAGCCACAGCC
ACAACAGCAGCAGCCGCCGCCCCAGCAGTCACGGCCTGTGCTCCAAGCTGAGCCCCACCCCCAGCTCGCC
TCAGTCTCTCCAAGCGTGGCCCTCCAGCCCAGCTCAGAGGCCCATGCCATGCCACTAGGCCCGGTTACAC
CCGCCCTGCCACTCCAGTGTCCCACTGCCAACCTGCACAAGCCTGGCGGCAGTCAGCAGTGTCACCCTCC
CACACCTGATACTGGGCCTCAGAATGGACATCCCGAGGGCGTGCCCCACACCCCTCAACGCAGGTTCCAG
CACACTTCAGCTGTCATCTTACAACTGCAGCCTGCTTCACCAGTGCCCCAGCAGTGTGTCCCTGATGACT
GGAAAGAAGTGGCACCAGGGGAGAAAAGTGTGCCTGAGACGCGGTCTGGCCCATCACCACATCAGCAGGC
TATTGTCACTGCCATGCCTGGTGGCCTGCCTGTACCCACGAGCCCTAACATCCAGCCGTCCCCAGCTCAC
GAGACAGGGCAGGGCATTGTTCATGCACTGACCGACCTCAGCAGCCCCGGCATGACCTCAGGGAACGGAA
ACTCTGCCTCCAGCATCGCCGGCACTGCCCCCCAGAATGGTGAGAATAAACCACCACAGGCCATTGTGAA
ACCCCAAATCCTGACGCATGTTATCGAAGGGTTTGTGATCCAGGAGGGGGCGGAGCCTTTCCCGGTGGGA
CGCTCGTCCCTGCTGGTGGGGAATCTCAAGAAGAAGTATGCACAGGGGTTCCTGCCTGAGAAACTTCCAC
AGCAGGATCACACCACCACCACTGACTCGGAGATGGAGGAGCCCTATCTGCAAGAATCCAAAGAGGAGGG
TGCTCCCCTCAAACTCAAGTGTGAGCTCTGTGGCCGGGTGGACTTTGCCTATAAGTTCAAGCGTTCCAAG
CGCTTCTGTTCCATGGCTTGTGCAAAGAGGTACAACGTGGGATGCACCAAACGGGTGGGACTTTTCCACT
CAGACCGGAGCAAGCTGCAGAAGGCAGGAGCTGCGACCCACAACCGCCGTCGGGCCAGCAAAGCCAGTCT
GCCACCACTTACCAAGGATACCAAGAAGCAGCCAACAGGCACTGTGCCCCTTTCGGTTACTGCTGCTTTG
CAGCTAACACACAGCCAGGAAGACTCCAGCCGTTGCTCAGATAACTCAAGCTATGAGGAACCCTTGTCAC
CCATCTCAGCCAGCTCATCTACTTCCCGCCGGCGACAAGGCCAGCGGGACCTGGAGCTCCCCGACATGCA
TATGCGGGACCTGGTGGGCATGGGACACCACTTCCTGCCAAGTGAGCCCACCAAGTGGAATGTAGAAGAC
GTCTACGAATTCATCCGCTCTCTGCCAGGCTGCCAGGAGATAGCAGAGGAATTCCGTGCCCAGGAAATCG
ACGGGCAAGCCCTGCTGCTGCTCAAGGAGGACCACCTGATGAGCGCCATGAACATCAAGCTGGGGCCCGC
CCTGAAGATCTACGCCCGCATCAGCATGCTCAAGGACTCCTAG

Translation (830 aa):
MENELPVPHTSSSACATSSTSGASSSSGCNNSSSGGSGRPTGPQISVYSGIPDRQTVQVIQQALHRQPST
AAQYLQQMYAAQQQHLMLQTAALQQQHLSSAQLQSLAAVQQASLVSNRQGSTSGSNVSAQAPAQSSSINL
AASPAAAQLLNRAQSVNSAAASGIAQQAVLLGNTSSPALTASQAQMYLRAQMVQNLTLRTQQTPAAAASG
PTPTQPVLPSLALKPTPGGSQPLPTPAQSRNTAQASPAGAKPGIADSVMEPHKKGDGNSSVPGSMEGRAG
LSRTVPAVAAHPLIAPAYAQLQPHQLLPQPSSKHLQPQFVIQQQPQPQQQQPPPQQSRPVLQAEPHPQLA
SVSPSVALQPSSEAHAMPLGPVTPALPLQCPTANLHKPGGSQQCHPPTPDTGPQNGHPEGVPHTPQRRFQ
HTSAVILQLQPASPVPQQCVPDDWKEVAPGEKSVPETRSGPSPHQQAIVTAMPGGLPVPTSPNIQPSPAH
ETGQGIVHALTDLSSPGMTSGNGNSASSIAGTAPQNGENKPPQAIVKPQILTHVIEGFVIQEGAEPFPVG
RSSLLVGNLKKKYAQGFLPEKLPQQDHTTTTDSEMEEPYLQESKEEGAPLKLKCELCGRVDFAYKFKRSK
RFCSMACAKRYNVGCTKRVGLFHSDRSKLQKAGAATHNRRRASKASLPPLTKDTKKQPTGTVPLSVTAAL
QLTHSQEDSSRCSDNSSYEEPLSPISASSSTSRRRQGQRDLELPDMHMRDLVGMGHHFLPSEPTKWNVED
VYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKIYARISMLKDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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