NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS81297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81297.1 Public Homo sapiens 1 TRIM62 24 110 108 CCDS HistoryNCBI Gene:55223Re-query CCDS DB by CCDS ID:81297.1Re-query CCDS DB by GeneID:55223See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81297.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543586.1 ENSP00000441173.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543586.1Link to Ensembl Protein Viewer:ENSP00000441173.1Re-query CCDS DB by Nucleotide ID:ENST00000543586Re-query CCDS DB by Protein ID:ENSP00000441173
Original member Current member NCBI NM_001330483.2 NP_001317412.1 Accepted alive Link to Nucleotide Sequence:NM_001330483.2Link to Protein Sequence:NP_001317412.1Re-query CCDS DB by Nucleotide ID:NM_001330483Re-query CCDS DB by Protein ID:NP_001317412Link to BLAST:NP_001317412.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317412.1 354 Q9BVG3-2 354 100% 0 0

Chromosomal Locations for CCDS 81297.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 33147177 33147727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33158253 33158368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33159688 33159944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33165471 33165566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33176408 33176452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGCCAGAGAAGACAGCAGTGGATCAGCCTTGGACGCAAGCCCTGAGGGAGCTGAAGGACCAACTTCAGG
CCCTTCAAGACAGCGAGCGGGAACACACCGAAGCGCTGCAGCTGCTCAAGCGACAACTGGCGGAGACCAA
GTCTTCCACCAAGAGCCTGCGGACCACTATCGGCGAGGCCTTCGAGCGGCTGCACCGGCTGCTGCGTGAA
CGCCAGAAGGCCATGCTAGAGGAGCTGGAGGCGGACACGGCCCGCACGCTGACCGACATCGAGCAGAAAG
TCCAGCGCTACAGCCAGCAGCTGCGCAAGGTCCAGGAGGGAGCCCAGATCCTGCAGGAGCGGCTGGCTGA
AACCGACCGGCACACCTTCCTGGCTGGGGTGGCCTCACTGTCCGAGCGGCTCAAGGGAAAAATCCATGAG
ACCAACCTCACATATGAAGACTTCCCGACCTCCAAGTACACAGGCCCCCTGCAGTACACCATCTGGAAGT
CCCTGTTCCAGGACATCCACCCAGTGCCAGCCGCCCTAACCCTGGACCCGGGCACAGCCCACCAGCGCCT
GATCCTGTCGGACGACTGCACCATTGTGGCTTACGGCAACTTGCACCCACAGCCACTGCAGGACTCGCCA
AAGCGCTTCGATGTGGAGGTGTCGGTGCTGGGTTCTGAAGCCTTCAGTAGTGGCGTCCACTACTGGGAGG
TGGTGGTGGCGGAGAAGACCCAGTGGGTGATCGGGCTGGCACACGAAGCCGCAAGCCGCAAGGGCAGCAT
CCAGATCCAGCCCAGCCGCGGCTTCTACTGCATCGTGATGCACGATGGCAACCAGTACAGCGCCTGCACG
GAGCCCTGGACGCGGCTTAACGTCCGGGACAAGCTTGACAAGGTGGGTGTCTTCCTGGACTATGACCAAG
GCTTGCTCATCTTCTACAATGCTGATGACATGTCCTGGCTCTACACCTTCCGCGAGAAGTTCCCTGGCAA
GCTCTGCTCTTACTTCAGCCCTGGCCAGAGCCACGCCAATGGCAAGAACGTTCAGCCGCTGCGGATCAAC
ACCGTCCGCATCTAG

Translation (354 aa):
MPEKTAVDQPWTQALRELKDQLQALQDSEREHTEALQLLKRQLAETKSSTKSLRTTIGEAFERLHRLLRE
RQKAMLEELEADTARTLTDIEQKVQRYSQQLRKVQEGAQILQERLAETDRHTFLAGVASLSERLKGKIHE
TNLTYEDFPTSKYTGPLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSP
KRFDVEVSVLGSEAFSSGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMHDGNQYSACT
EPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRIN
TVRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH