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Report for CCDS81085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81085.1 Public Mus musculus 9 Cspg5 23 108 98 CCDS HistoryNCBI Gene:29873Re-query CCDS DB by CCDS ID:81085.1Re-query CCDS DB by GeneID:29873See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 81085.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196060.4 ENSMUSP00000143164.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196060.4Link to Ensembl Protein Viewer:ENSMUSP00000143164.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196060Re-query CCDS DB by Protein ID:ENSMUSP00000143164
Original member Current member NCBI NM_013884.3 NP_038912.3 Accepted alive Link to Nucleotide Sequence:NM_013884.3Link to Protein Sequence:NP_038912.3Re-query CCDS DB by Nucleotide ID:NM_013884Re-query CCDS DB by Protein ID:NP_038912Link to BLAST:NP_038912.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038912.3 539 Q71M36-2 539 100% 0 0

Chromosomal Locations for CCDS 81085.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110245598 110245694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110246295 110247390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110250959 110251147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110256145 110256220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110262060 110262221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGGCCGAGCTGGAGGCGGGGGCCCGGACTGGGGGCCGCCGCCAGTGCTGCTGCTTCTGGGGGTCACGC
TGGTGCTCACCGCTGGGGCCGTACCGGCACGGGAAACAGGCAGTGCGATCGAGGCTGAAGAGCTGGTGAG
GAGCAGCCTGGCATGGGAGTCGCGTGCCAATGACACGCGGGAGGAAGCCGGCCTGCCAGCAGCTGGGGAA
GATGAGACCTCGTGGACAGAGCGGGGCAGTGAGATGGCTGCGGTGGGCCCTGGGGTCGGGCCAGAGGAGG
CACTAGAGGCATCGGCTGCAGTGACTGGCACTGCCTGGCTAGAGGCAGATGGCCCAGGCCTGGGTGGAGT
GACTGCAGAGGCTGGCAGTGGCGACGCCCAGACCCTTCCAGCTACGCTCCAGGCTCCTGATGAGGCCCTT
GGGTCATCTACAATGCCCCCTGCCATCCCTGAGGCTACTGAAACCAGTGGACCTCCCTCCCCTGCTGTCC
ATGATAAGCCTAGTGTAGGCCCTGAACTCCCTAAAGAGATCCCCTTGGAGGTTCGGCTGAACCTGGGAGG
CAGCACACCAGAGCCCACTTTTCCCCTTCAGGGCACTCTCGAGACCCAACCAGCCTCAGATATAATTGAC
ATTGATTACTTTGAAGGATTGGATAGTGAGGGTCGTGGTGCAGACATGGGCAGCTTCCCGGGGTCACCAG
GAACCTCAGAAAATCACCCTGATACCGAAGGAGAGACCCCTTCCTGGAGCCTGCTTGATTTGTATGATGA
CTTCACCCCTTTTGATGAGTCTGATTTCTACCCCACCACATCCTTCTATGATGATTTGGAAGAGGAGGAA
GAAGAGGAGGAGGATAAGGATACAGTAGGAGGTGGAGACCTGGAAGATGAAAACGACCTTCTCCTGCCCT
CTCAAAAGCCTGGTGTGGGGCCTGGGACAGGACAGCCCACCAACCGGTGGCATGCTGTTCCCCCACAGCA
TACTCTGGGGATGGTACCTGGCAGCAGCATCTCTCTTAGGCCCCGCCCCGGAGATCCAGGCAAGGACCTG
GCCTCAGGAGAAAATGGCACAGAGTGCCGAGTTGGCTTCGTCAGGCACAATGGCTCCTGCCGGTCAGTCT
GTGACCTCTTTCCGAGTTACTGTCACAACGGCGGCCAGTGCTACCTGGTGGAGAACATAGGGGCTTTCTG
CAGGTGTAACACCCAGGACTACATCTGGCACAAGGGGATGCGCTGTGAGTCCATCATCACGGACTTCCAG
GTGATGTGCGTGGCCGTTGGCTCGGCTGCTCTCGTGCTTCTCCTCCTGTTCATGATGACTGTGTTCTTTG
CCAAGAAGCTCTATCTGCTCAAGACTGAGAATACCAAGCTGCGGAGGACCAATAAATTCCGGACCCCATC
TGAGCTCCACAACGACAACTTCTCCCTCTCCACCATTGCCGAGGGCTCTCATCCAAATGACGACCCCAGC
GCTCCCCACAAAATCCAGGACCCTCTCAAGTCCCGCCTGAAGGAGGAAGAGTCCTTTAACATCCAGAACT
CCATGTCACCCAAACTTGAGGGTGGCAAAGGTGACCAGGATGACTTGGGGGTGAACTGTCTGCAGAATAA
CCTAACCTGA

Translation (539 aa):
MGRAGGGGPDWGPPPVLLLLGVTLVLTAGAVPARETGSAIEAEELVRSSLAWESRANDTREEAGLPAAGE
DETSWTERGSEMAAVGPGVGPEEALEASAAVTGTAWLEADGPGLGGVTAEAGSGDAQTLPATLQAPDEAL
GSSTMPPAIPEATETSGPPSPAVHDKPSVGPELPKEIPLEVRLNLGGSTPEPTFPLQGTLETQPASDIID
IDYFEGLDSEGRGADMGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLEEEE
EEEEDKDTVGGGDLEDENDLLLPSQKPGVGPGTGQPTNRWHAVPPQHTLGMVPGSSISLRPRPGDPGKDL
ASGENGTECRVGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIAEGSHPNDDPS
APHKIQDPLKSRLKEEESFNIQNSMSPKLEGGKGDQDDLGVNCLQNNLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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