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Report for CCDS81069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81069.1 Public Mus musculus 9 Sema3f 23 108 98 CCDS HistoryNCBI Gene:20350Re-query CCDS DB by CCDS ID:81069.1Re-query CCDS DB by GeneID:20350See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192727.5 ENSMUSP00000141865.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192727.5Link to Ensembl Protein Viewer:ENSMUSP00000141865.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192727Re-query CCDS DB by Protein ID:ENSMUSP00000141865
Original member NCBI NM_001311151.1 NP_001298080.1 Updated not alive Link to Nucleotide Sequence:NM_001311151.1Link to Protein Sequence:NP_001298080.1Re-query CCDS DB by Nucleotide ID:NM_001311151Re-query CCDS DB by Protein ID:NP_001298080
NCBI NM_001311151.2 NP_001298080.1 Updated not alive Link to Nucleotide Sequence:NM_001311151.2Link to Protein Sequence:NP_001298080.1Re-query CCDS DB by Nucleotide ID:NM_001311151Re-query CCDS DB by Protein ID:NP_001298080
Current member NCBI NM_001311151.3 NP_001298080.1 Accepted alive Link to Nucleotide Sequence:NM_001311151.3Link to Protein Sequence:NP_001298080.1Re-query CCDS DB by Nucleotide ID:NM_001311151Re-query CCDS DB by Protein ID:NP_001298080Link to BLAST:NP_001298080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001298080.1 785 O88632-1 785 100% 0 0

Chromosomal Locations for CCDS 81069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107682429 107682839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107683560 107683693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107683973 107684040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107684222 107684379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107684550 107684591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107684688 107684776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107685325 107685547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107687190 107687334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107687490 107687559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107687730 107687844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107687949 107688088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107688230 107688349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107689686 107689779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107691356 107691448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107692168 107692287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107692389 107692451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107692556 107692716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107705431 107705542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2358 nt):
ATGCTTGTCACTGCCTTCATCCTCTGGGCTTCCCTGCTGACCGGGGCCTGGCCTGCTACCCCTATCCAGG
ACCAGCTTCCAGCCACACCTAGAGTCCGACTGTCATTCAAAGAACTTAAGGCCACCGGTACCGCCCACTT
CTTCAACTTTCTGCTCAACACTACAGACTACAGAATCCTGCTCAAGGATGAGGACCATGACCGCATGTAT
GTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCATGACATCAACCGAGAGCCCCTTATTATCCATT
GGGCAGCCTCCCCGCAGCGCATTGAGGAGTGCATACTGTCAGGCAAGGATGGCAATGGAGAGTGTGGTAA
CTTCGTCCGGCTCATCCAGCCTTGGAACCGAACACACCTGTATGTGTGTGGGACCGGTGCCTACAACCCC
ATGTGCACCTATGTGAACCGTGGCCGTCGCGCACAGGCCCTACCGTGGACCCAGATGCAGGTGGTCAGAG
GCCGAGGCAGCAGGGCCACCGATGGTGCCGACCGCCCGACGCCCACAGCCCCACGCCAGGATTACATCTT
CTACCTGGAGCCTGAGAAACTGGAGTCAGGAAAAGGCAAATGTCCCTATGACCCCAAGCTGGACACAGCC
TCAGCCCTCATCAATGAGGAACTCTATGCAGGAGTGTACATCGATTTTATGGGTACCGATGCAGCCATTT
TCCGCACGCTGGGGAAGCAGACAGCCATGCGCACAGATCAGTACAACTCCCGGTGGCTCAATGATCCTTC
CTTCATACATGCTGAGCTCATCCCTGACAGTGCAGAGCGCAATGACGATAAACTCTACTTCTTCTTCCGA
GAGCGCTCGGCAGAGGCGCCACAGAACCCTGCTGTGTATGCCCGCATCGGGCGCATCTGCCTCAACGATG
ACGGTGGCCATTGCTGCCTGGTCAACAAGTGGAGCACATTCCTGAAGGCTCGGCTCGTCTGCTCCGTGCC
AGGCGAGGATGGTATTGAGACCCACTTCGACGAACTCCAGGATGTGTTTGTCCAGCAGACCCAGGACGTC
AGGAACCCAGTCATTTATGCTGTCTTTACCTCTTCAGGCTCTGTGTTCCGAGGGTCTGCAGTGTGTGTCT
ACTCCATGGCTGATATCCGCATGGTCTTCAATGGGCCTTTTGCTCACAAGGAGGGCCCCAACTATCAATG
GATGCCCTTCTCAGGAAAGATGCCCTATCCTCGGCCTGGCACATGCCCTGGTGGAACCTTCACGCCCTCG
ATGAAGTCCACTAAGGACTACCCTGATGAAGTGATCAACTTCATGCGCACTCATCCGCTCATGTACCAGG
CCGTCTACCCGCTCCAGCGGCGACCCCTGGTGGTCCGTACAGGCGCTCCCTACCGCCTCACCACTGTCGC
TGTGGACCAGGTGGATGCAGCTGATGGACGCTATGAGGTGCTTTTCCTGGGCACAGACCGCGGGACAGTG
CAGAAGGTCATCGTGCTGCCCAAGGACGACCAGGAGGTGGAAGAGCTGATGCTAGAGGAAGTGGAGGTCT
TCAAGGAACCAGCACCTGTTAAGACCATGACCATCTCTTCCAAGAGGCAACAACTGTATGTGGCCTCAGC
CGTGGGTGTCACACACCTGAGCCTGCACCGCTGCCAGGCCTATGGAGCTGCCTGTGCCGACTGCTGCCTT
GCCCGCGATCCCTACTGTGCCTGGGATGGCCAGGCCTGCTCTCGCTACACAGCATCCTCCAAGAGGCGGA
GTCGCCGGCAAGATGTCCGCCACGGGAACCCTATCAGACAGTGCCGTGGTTTCAATTCCAATGCAAACAA
GAATGCCGTAGAGTCTGTGCAGTACGGAGTGGCCGGCAGCGCAGCTTTCCTTGAGTGTCAGCCCCGCTCA
CCTCAAGCCACTGTCAAGTGGCTGTTCCAGCGAGATCCCAGTGATCGGCGCCGTGAGATTCGCGCAGAGG
ACCGCTTCCTGCGTACAGAGCAGGGGCTGTTGCTTCGCGCCCTGCAGCTTGGTGACCGCGGCCTCTACTC
CTGCACGGCCACTGAGAACAACTTCAAGCACATCGTCACGCGGGTGCAGCTGCATGTACTGGGCCGGGAT
GCCGTCCATGCTGCCCTCTTCCCCCCACTGGCTGTGAGCGTCCCTCCACCTCCTGGCACAGGCCCTCCAA
CGCCTCCTTACCAGGAGCTGGCCCAGCTCCTAGCCCAGCCGGAAGTGGGCCTCATCCATCAGTACTGCCA
GGGTTACTGGCGCCACGTGCCCCCCAGACCCAGGGAGGCGCCAGGAGCACTTAGGCCTCCTGAACTCCAG
GACCAGAAAAAGCCGAGGAACCGCCGCCACCACCCTCCGGACACATGA

Translation (785 aa):
MLVTAFILWASLLTGAWPATPIQDQLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRILLKDEDHDRMY
VGSKDYVLSLDLHDINREPLIIHWAASPQRIEECILSGKDGNGECGNFVRLIQPWNRTHLYVCGTGAYNP
MCTYVNRGRRAQALPWTQMQVVRGRGSRATDGADRPTPTAPRQDYIFYLEPEKLESGKGKCPYDPKLDTA
SALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERNDDKLYFFFR
ERSAEAPQNPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDGIETHFDELQDVFVQQTQDV
RNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKEGPNYQWMPFSGKMPYPRPGTCPGGTFTPS
MKSTKDYPDEVINFMRTHPLMYQAVYPLQRRPLVVRTGAPYRLTTVAVDQVDAADGRYEVLFLGTDRGTV
QKVIVLPKDDQEVEELMLEEVEVFKEPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCL
ARDPYCAWDGQACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRS
PQATVKWLFQRDPSDRRREIRAEDRFLRTEQGLLLRALQLGDRGLYSCTATENNFKHIVTRVQLHVLGRD
AVHAALFPPLAVSVPPPPGTGPPTPPYQELAQLLAQPEVGLIHQYCQGYWRHVPPRPREAPGALRPPELQ
DQKKPRNRRHHPPDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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