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Report for CCDS81040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81040.1 Public Mus musculus 9 Senp6 23 108 98 CCDS HistoryNCBI Gene:215351Re-query CCDS DB by CCDS ID:81040.1Re-query CCDS DB by GeneID:215351See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81040.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165607.8 ENSMUSP00000126777.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165607.8Link to Ensembl Protein Viewer:ENSMUSP00000126777.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000165607Re-query CCDS DB by Protein ID:ENSMUSP00000126777
Original member Current member NCBI NM_001311110.1 NP_001298039.1 Accepted alive Link to Nucleotide Sequence:NM_001311110.1Link to Protein Sequence:NP_001298039.1Re-query CCDS DB by Nucleotide ID:NM_001311110Re-query CCDS DB by Protein ID:NP_001298039Link to BLAST:NP_001298039.1

Chromosomal Locations for CCDS 81040.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 80067524 80067572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80087430 80087523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80089849 80089906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80092267 80092412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80093537 80093641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80098886 80098906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80103694 80103764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80111311 80111453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80113727 80114114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80116532 80116764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80118478 80118642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80121327 80121360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80121864 80122058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80123720 80123946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80126143 80126252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80126336 80126452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80130739 80130858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80132889 80132981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80136458 80136882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80139044 80139147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80140818 80140906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80142083 80142151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80142245 80142395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80143650 80143862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3420 nt):
ATGGCGGCGGGCAAGAGCGGTGGCAGCGCTGGGGCTCTTTTCCTGAAAGCTTTGGATAGATCAGAATCTA
AGAGGGATGGAGGCTTTAAAAATAATTGGAGCTTTGATCATGAAGAAGAAAGTGAAGGAGATGCAGACAA
AGATGGGGCAAATCTACTCAGTGTAGAAGATGAGGATTCTGAAATCTCAAAAGGAAAAAAGTTAAATCGG
AGATCTGAAATTGTTGCTACTAGTTCTGGTGATTTCATCTTGAAGACTTATGTAAGGCGGAGCAAGACTG
ACGGCTTTAAAACTTTGAAAGGCAACCCAATTGGACTTAACATGTTAAGCAACAATAAGAAACTGAGTGA
AAGCACCGCAGGCACAGCATTATGTTCTGGAACTGTGGTTCATGGGAGGCGCTTCCATCATGCTCACTCA
CAGACGCCAGGCATCAGAACAGCGGCTCAGAGCAATCAGGACCGAAAAGAAAGGAAAGAATACCCACCTT
ATGTCCACAAAGCTGAAAACAGCCCTGTAATGCTAAGTCATGGCCAAGGTGGAGACCATATAATGAAGAA
AACTGAAGAGTCAGAATCATATGTAGAGTCTGAGATTAAGAGGAAAGTCCAGCAGAAGCGGCACTGTAGC
ACTTACCAGCTTTCTCCTCTGTCCCCTGCCTCAAAGAAGTGTTTGACCCATTTAGAGGTTTCTGAACAGC
GTGAATATTGCCCAAAATGTGGAAAAGAAAAAGAAAATCAGACCAAATGCCAAAGTTGTGGTATTGTTTT
TCATAATGATTTGCAAAGAAATTGCCGACAAGCCGTAACTTTGAATGAACCTACTGGACCATTGCTAAGA
ACATCAATTCATCAGAACTCTGGAGGACAGAAATCACAAAACACAGGACTAACAGCTAAGAAATTTTATG
GGAACAGTGTGGATAAGATTCCAATTGATATTTTGGTCACCTGTGATGATAGCAGACATAATTACATACA
GACAAATGGGAAAGTCATTTTACCTGGAGGAAAAATACCTAAACTCACAAACCCAAAAGAGCGAAAGATA
AGCGTGTCAGATTTAAACGATCCAATCATTTTGTCTAGTGATGATGATGACGACGACGACGATAGGACTA
AGAGAAGAGAGAGCACGTCCCCGAAGCCTGCCGACTCAGCATGCTCCTCACCAGTACCATCTACGGGAAA
AGTTGAAGCTGCACTAAATGCAGATGCCTGTAGAGCAGAGCAGGAACCCAGAAGCAGTCCAGCAGAGCCT
GAGTTAAATACCATTGTCATACCACGAAAAGCAAGAATGAAGGACCAGCTTGGTAATTCCATCAGCACAC
CTTTAAAACGTCGTAAAGTAAACAGTCATGCAGCTTTTATTCACCCTATGTCTTTAAGTTGCCAAAACTT
TGAAAGTGTCATTTTAAACTGCCGAAGTATACGAGTTGGAACACTCTTCCGACTGTTGGTAGAGCCTGTA
ATTTTTTCTTTAGAGTCAATCACGATACATCTAGATGGACCAGAAAGTGATCCTGTAGACATTATTTTAA
ATACCTCTGATCTAACTAAATGTGAATGGTGTAATGTCCGGAAATTACCAGTAGTGTTTCTCCAGGCAAT
ACCAGCAGTTTACCAGAAGCTGAGCATGCAGCTACAGATGAGTAAAGAAGATAAAGTTTGGAATGATTGT
AAAGGAATAAACAGGATAACAAGTTTAGAAGAACAGTACATTATTTTAATTTTTCAAACTGGCCTTGATC
ATCAGGCAGAGGTGGTCTTTGAAAGTATCATTACTGACATTGGTATAAGGAATAATGTTCCCAACTTTTT
TGCAAAAATTCTTTTTGACGAAGCCAATAGCAGACTTGTTGCCTGTACAAGAAGCTATGAAGAGAGCATC
AAAGGAAACTGCGCGCAAAAAGAGAACAAAGTGAAAACTGTGTCGTTTGAATCTAAAATACAACTTAGAA
GCAAACAAGAATTGCAGTTTTTTGATGATGACGAAGAAGCTGGGGAGAGCCATACAATCTTCATTGGCCC
TGTAGAAAAATTGATAGTATACCCACCACCTCCAGCTAAGGGAGGCATTTCTGTTACTAATGAGGACCTG
CACTGTCTAAGTGAAGGAGAGTTTTTAAATGATGTTATTATCGACTTTTATTTGAAATACTTGGTGCTTG
AAAAACTGAAGAAAGAAGACGCTGACCGAATTCATATATTTAGTTCTTTTTTCTATAAACGCCTTAATCA
GAGAGAGAGGAGAAATCCTGAGACAACTAATCTGTCGATACAACAAAAACGGCATGGGAGAGTAAAAACG
TGGACACGGCATGTAGATATTTTTGAGAAGGACTTTATTTTTGTACCCCTTAATGAAGCTGCACATTGGT
TTTTGGCTGTTGTTTGTTTCCCTGGTTTGGAAAAACCAAAATATGAACCTAATCCTCATTACCATGAAAA
TGCAGTCATGCAAAAAACTCCAAGTGCAGAGGACAGTTGTGTTTCTTCTGCCAGTGAGATGGGTGCTTGT
TCACAGAACTCTGCTGCCAAGCCTGTGATCAAGAAGATGTTAAATAGAAAACATTGCTTAGCTGTGACTG
ATTCGAGTGCTGCACAGGAAGAAAGTGAGCCTTGTTACCGGAGAAACGCATACAGTGTAAAGTGTAGTAT
GAAAAAAAAAAATCATGCTATCAATGAAAATGAAGAACCAAGTAACGGAGAATCTACGTGCCAGGACATT
TGTGATAGAACCCAAAGTGAGAATGGCCTCCGGGATGAATGCTTCAGTTCTGTACATCATCCAGATGCCT
TAAGCAAAATCAGACTAAACTACGGTGATCAGTCAGCAGACGGTGGGAAGCTGCTTGAAGATGAGCTCAT
TGACTTCTCAGAGGATCAGGATGACCCGGATGATAGCAGTGATGACGGACTCCTTGCTGATGAAAACTAC
AGTTCAGAAATAGGACAGTGGCATTTAAAGCCTACTGTCTGTAAACAACCTTGTATCCTCCTTATGGACT
CACTCAGAGGCCCTTCTCGTTCAAATGTTGTCAAAATTCTAAGAGAGTATTTAGAAGTGGAATGGGAGGT
GAAAAAAGGAAGCAAAAGAAGTTTTTCCAAAGATGTTATGAAAGGGTCCAACCCAAAAGTCCCACAACAG
AACAACTTCAGTGACTGTGGTGTCTATGTGCTGCAGTATGTAGAGAGCTTTTTTGAGAATCCAGTACTAA
ATTTTGAGCTCCCTATGAATTTGATGAACTGGTTTCCTCCCCCCAGAATGAAAACAAAAAGAGAAGAAAT
CCGAAACATAATTTTGAAGCTACAGGAATCACAGAGTAAAGACAAGAAGCTGCTGAAGGACTCCTTAGCA
GAGACGTCCTTAGGGGACGGAGCAGAGCAGTACGCCAGCGCCAGCGGTGGCTCAGAGTGA

Translation (1139 aa):
MAAGKSGGSAGALFLKALDRSESKRDGGFKNNWSFDHEEESEGDADKDGANLLSVEDEDSEISKGKKLNR
RSEIVATSSGDFILKTYVRRSKTDGFKTLKGNPIGLNMLSNNKKLSESTAGTALCSGTVVHGRRFHHAHS
QTPGIRTAAQSNQDRKERKEYPPYVHKAENSPVMLSHGQGGDHIMKKTEESESYVESEIKRKVQQKRHCS
TYQLSPLSPASKKCLTHLEVSEQREYCPKCGKEKENQTKCQSCGIVFHNDLQRNCRQAVTLNEPTGPLLR
TSIHQNSGGQKSQNTGLTAKKFYGNSVDKIPIDILVTCDDSRHNYIQTNGKVILPGGKIPKLTNPKERKI
SVSDLNDPIILSSDDDDDDDDRTKRRESTSPKPADSACSSPVPSTGKVEAALNADACRAEQEPRSSPAEP
ELNTIVIPRKARMKDQLGNSISTPLKRRKVNSHAAFIHPMSLSCQNFESVILNCRSIRVGTLFRLLVEPV
IFSLESITIHLDGPESDPVDIILNTSDLTKCEWCNVRKLPVVFLQAIPAVYQKLSMQLQMSKEDKVWNDC
KGINRITSLEEQYIILIFQTGLDHQAEVVFESIITDIGIRNNVPNFFAKILFDEANSRLVACTRSYEESI
KGNCAQKENKVKTVSFESKIQLRSKQELQFFDDDEEAGESHTIFIGPVEKLIVYPPPPAKGGISVTNEDL
HCLSEGEFLNDVIIDFYLKYLVLEKLKKEDADRIHIFSSFFYKRLNQRERRNPETTNLSIQQKRHGRVKT
WTRHVDIFEKDFIFVPLNEAAHWFLAVVCFPGLEKPKYEPNPHYHENAVMQKTPSAEDSCVSSASEMGAC
SQNSAAKPVIKKMLNRKHCLAVTDSSAAQEESEPCYRRNAYSVKCSMKKKNHAINENEEPSNGESTCQDI
CDRTQSENGLRDECFSSVHHPDALSKIRLNYGDQSADGGKLLEDELIDFSEDQDDPDDSSDDGLLADENY
SSEIGQWHLKPTVCKQPCILLMDSLRGPSRSNVVKILREYLEVEWEVKKGSKRSFSKDVMKGSNPKVPQQ
NNFSDCGVYVLQYVESFFENPVLNFELPMNLMNWFPPPRMKTKREEIRNIILKLQESQSKDKKLLKDSLA
ETSLGDGAEQYASASGGSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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