CCDS Report for Consensus CDS

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Report for CCDS80941.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
80941.1	Public	Mus musculus	8	Zc3h18	23	108	98

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80941.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000176629.7	ENSMUSP00000134743.1	Accepted	alive
		NCBI	NM_001310650.1	NP_001297579.1	Accepted	alive

Chromosomal Locations for CCDS 80941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)

Genome Browser links:

Chromosome	Start	Stop
8	122383414	122384004
8	122386862	122386946
8	122387693	122387764
8	122397818	122397966
8	122398236	122398328
8	122399005	122399162
8	122401591	122401708
8	122403151	122403419
8	122407332	122407523
8	122408243	122408368
8	122410881	122410985
8	122411284	122411427
8	122412990	122413150
8	122413263	122413462
8	122413857	122413950
8	122416036	122416132
8	122416476	122416674

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGGATGTGGCCGAGAGCCCTGAACTGGATCCTCACTCCCCAGAGGATGAAGAGCAGCCGGCACTCTCAG ATGATGACATTCTAAGAGAAAGTGGATCTGAACAAGATTTGGATGGAGCTGGGGAAAGGGCGTCTGATTT GGAGGAGGAGGAAAATGCAACCAGGGTACAAAGCCAGGAGGAGACTCGCTCGGATGAGGAAGACCGAGCC AGTGAGCCCAAGTCCCAAGATCAGGACTCAGAGGCTCATGAGCTGAGCAGGGGCCCAGCGGGATCCCCAT GCGAGGAGGGGGATGATGTTGAGGAAGATGGGACAAGTGACCTCAGGGACGAAGCCTCCTCGGTGACCCG GGAACTGGATGAGCATGAACTAGACTATGATGAGGAGGTCCCTGAGGAGCCAGCTCCTGCTGCCCAGGAG GAGGAGGCTGAGAAGGCTGGGGCTGAGGAGGAGGAGGAGAAGGGGGAAGGGGCTCCCGGAGAGGAAGGGA AGCCTGATGTTCAAAGTGTGGGAGAACAAGAACCCACAGAAGCTGCCAAGGAGAAGAAGAAAGAGGATGA CGACGGGGAGATCGATGATGGCGAGATAGACGATGATGACTTGGAGGAAGGCGAGGTGAAGGACCCCAGT GACCGGAAGGTGAGGCCTCGCCCCACCTGCCGATTCTTCATGAAAGATGTTGTGACACCATTATCCACTC TTCTTCCACCAATACCAAATTCCATACCACTCAGAGGCCAGGTTAAAGGAAACTGCACGTGGGGAATGAG CTGTAGGTTTATCCACCCTGGAGTGAATGACAAAGGCAACTACTCCCTCATCACCAAAGCGGAACCTTTT CCACCCAACGGTGCCCCGCCTCTTGGACCTCACCCACTGATGCCTGCCAACCCTTGGGGTGGGCCAGTGG TTGATGAAATTTTGCCTCCACCCCCTCCAGAGCCCCCAACAGAGAGCGCCTGGGAACGTGGACTCCGACA TGCAAAAGAGGTTTTAAAAAAAGCAACCATTCGGAAAGAGCAGGAGCCCGACTTTGAAGAAAAAAGGTTC ACAGTAACCATTGGTGAAGACGACCGGGAGTTTGACAAGGAGAATGAAGTCTTCCGAGATTGGAATTCTC GAGTCCCGAGAGATGTCAGAGACACAACACTTGAGCCTTATGCAGACCCTTATTATGACTATGAGATAGA ACGGTTTTGGCGTGGTGGACAGTACGAGAATTTCAGGGTGCAGTATACAGAAGCAGAACCGTATCATAAC TATCGCGAACGAGAGAGGGAACGAGAGCGAGAAAACAGACAACGAGAACGCGAGCGGGAACGAGAGCGTG ACCGAGAGCGGGAGCGCAGGCAGAGAGAGCGGGAGCGAGAACGGGAACGAGAGCGGGACAAGGAGCGGCA GCGGAGGAAAGAGGAGTGGGAGAGAGAGAGAGCCAAGCGAGACGAGAAGGACCGGCAACACCGAGACCGA GACAGGGACAAGGACCGGGAGAAGGACAAGGAGAAGCCGAAGCCCAGGTCCCCACAGCCACCGAGCCGTC AAGCTGAACCACCAAAGAAGGAGAGCACCTCTGTGGGGCCCCAGGTGAAGCGAGCCGATGAGTGGAAGGA CCCCTGGCGCCGATCCAAGTCTCCCAAGAAGAAGCTTGGCGTGTCCGTCTCCCCAAGCCGGGCACGAAGA CGTCGCAAAACCTCCGCCTCCTCAGCCTCTGCTTCCAATTCCTCCAGGTCATCGTCACGGTCTTCATCCT ACTCTGGCTCTGGCTCGTCCCGCTCCCGCTCCCGCTCCTCCTCCTACAGCTCCTATTCTAGCCGCTCTTC CAGACACAGCTCGTTCTCAGGCAGCCGATCCAGGTCCCGGTCCTTCTCCTCGTCCCCATCCCCGTCTCCC ACACCTTCCCCACACAGACCTCCAGTCAGAACCAAGGGGGAGCCGGCCCCACCTCCTGGGAAAGCAGGGG AGAAGTCAATAAAGAAGCCAGCCCCTCCCCCAGCCCCACCACAGGCCACCAAAACTACTGCTCCTGGTCC TGAGCCTGCCAAACCTGGAGATCTCCGAGAAGCCAGGAGAAAGGAGCGGCAAACCAGGACTCCCCCAAGG AGGTCTCTGAGTGTGAGCAGCGTTTCCTCAGTGTCCAGCGCCACCTCGAGTAGCAGCTCAGTGCACAGTG TGGACTCAGATGACATGTATGCAGACCTGGCCAGTCCTGTGTCCTCAGCCAGCTCTCGATCCCCAACTCC TGCCCAGACCAAGAAGGAGAGAGGGAAATCCAAGAAAGAAGACGGAGTGAGAGAGGAAAAGCGGAGGCGG GACCCATCCGCGCAGCCGCCCAAGTCCTCTAAAGCTCCAGCGGGTGGGAAGGCCTCCCAGCAGGCAGCGG CGCCTCAGCCGGCGGTCCCCGGGCAGCCCCAACAGGGCTCCTTTGTTGCCCACAAGGAGATAAAGCTGAC ACTGCTGAACAAGGCGGCTGATAAAGGAAGCCGGAAGCGCTATGAGCCATCAGACAAGGACCGGCAGAGC CCTCCTGCCAAGAAGGCCAACTTGTCCCCAGACCGAGGTTCTCGAGACCGGAAATCAGGTGGAAGAATGG GCTCCCCAAAACCAGAGAGGCAGAGAGGCCAGAACGCTAAAGCTCCTGCTGCCCCAGCGGACAGGAAGCG TCCACTGTCACCCCAGTCTAAGGGCTCCAGCAAGGTCACCAGCGTGCCTGGCAAAGCCACAGATACTGCC ACAGCAGGCACCAAGTCAGGGAAGGCCAGCACATTGTCACGGCGAGAGGAGCTCCTTAAACAGCTCAAAG CGGTTGAGGACGCCATCGCTCGCAAGCGGGCCAAGATCCCCGGGAAAGTGTAG
Translation (950 aa):
MDVAESPELDPHSPEDEEQPALSDDDILRESGSEQDLDGAGERASDLEEEENATRVQSQEETRSDEEDRA SEPKSQDQDSEAHELSRGPAGSPCEEGDDVEEDGTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAAQE EEAEKAGAEEEEEKGEGAPGEEGKPDVQSVGEQEPTEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPS DRKVRPRPTCRFFMKDVVTPLSTLLPPIPNSIPLRGQVKGNCTWGMSCRFIHPGVNDKGNYSLITKAEPF PPNGAPPLGPHPLMPANPWGGPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRF TVTIGEDDREFDKENEVFRDWNSRVPRDVRDTTLEPYADPYYDYEIERFWRGGQYENFRVQYTEAEPYHN YRERERERERENRQRERERERERDRERERRQRERERERERERDKERQRRKEEWERERAKRDEKDRQHRDR DRDKDREKDKEKPKPRSPQPPSRQAEPPKKESTSVGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARR RRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSP TPSPHRPPVRTKGEPAPPPGKAGEKSIKKPAPPPAPPQATKTTAPGPEPAKPGDLREARRKERQTRTPPR RSLSVSSVSSVSSATSSSSSVHSVDSDDMYADLASPVSSASSRSPTPAQTKKERGKSKKEDGVREEKRRR DPSAQPPKSSKAPAGGKASQQAAAPQPAVPGQPQQGSFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQS PPAKKANLSPDRGSRDRKSGGRMGSPKPERQRGQNAKAPAAPADRKRPLSPQSKGSSKVTSVPGKATDTA TAGTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKV

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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