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Report for CCDS80890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80890.1 Public Mus musculus 8 Tmem161a 23 108 98 CCDS HistoryNCBI Gene:234371Re-query CCDS DB by CCDS ID:80890.1Re-query CCDS DB by GeneID:234371See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182980.7 ENSMUSP00000138499.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182980.7Link to Ensembl Protein Viewer:ENSMUSP00000138499.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182980Re-query CCDS DB by Protein ID:ENSMUSP00000138499
Original member NCBI NM_001293797.1 NP_001280726.1 Updated not alive Link to Nucleotide Sequence:NM_001293797.1Link to Protein Sequence:NP_001280726.1Re-query CCDS DB by Nucleotide ID:NM_001293797Re-query CCDS DB by Protein ID:NP_001280726
Current member NCBI NM_001293797.2 NP_001280726.1 Accepted alive Link to Nucleotide Sequence:NM_001293797.2Link to Protein Sequence:NP_001280726.1Re-query CCDS DB by Nucleotide ID:NM_001293797Re-query CCDS DB by Protein ID:NP_001280726Link to BLAST:NP_001280726.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280726.1 328 Q8VCA6-2 328 100% 0 0

Chromosomal Locations for CCDS 80890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70178880 70179018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70180539 70180599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70180706 70180849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70180936 70181049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70181149 70181323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70181430 70181526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70181883 70182139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGTGACCCGGCTGTACTTCAGTACCAAGGAGGGCGGTGAGCGCTCCGTATGTCTCTCCTTTGCCTTCC
TCTTCCTCCTCTTGGCCATGCTGGTACAGGTGGTGCGGGAGGAGACCCTGGAGCTGGGCCTGGAGCCGGG
CCTAGCCAGCATGACCCAGCACCTGGAGCCTATTCTGAAGAAGCAGGATTGGGACTGGACACTCCCTGTG
ATCAAGTTGGCCATCCGCCTTGGGCTGGCGGTGCTAGGCTCCCTGCTGGGCGCCTTCCTCATTTTCCCTG
GCCTGAGGCTGGCCCAGACCCACCAGGACGCGCTGACCCTGTCTGCGGACCGACCACTGCTACAGCTGCT
CCTACACACCAGCTTCCTGTCACCCCTGTGCACCTTGTGGCTCTGGACAAAGCCTGTCGCCCGGGACTTC
CTGTACCAGGCACCCACAAGGAACATGACTTTCTCTGTACCGTCAGAAGGGGCTTTCGACTCTCTGCGCC
TCTGGGTGTTGGTGGCGCTGTGCCTGTTGCGCCTGGCAGTAACCCGGCCACACCTGCAGGCCTACCTGTG
CCTGGCCAAGGCTCGAGTGGAGCAGCTGCGCAAGGAGGCTGGCCGCATTGAGGCCCGTGAAATCCAGCAG
CGGGTGGTCCGGGTCTACTGCTACGTGACTGTGGTGAGCCTGCAGTACCTGACCCCGCTCATCCTCACTC
TGCACTGCACACTGCTGCTCAAGACCCTGGGAGGCTACTCTTGGGCCCTGAGCTCTACTCCTCCCCCACT
GGCCCCATCCCAGCCCTCAGAGGCTTTGATCCCTGTAGACCCTGCAGGAGATGAGGCCCAGCAGACTGCA
GCCCAGGTTGCAGGGATCCTGGGTGGCCTGCTCACGCCCCTCTTCCTCAGAGGCATGCTGGCTTACATCA
TCTGGTGGACAGCTGCCTGCCAGCTGCTCTCCAGCCTCTTCGGCCTCTATTTCCACCAGCACCTGGCAGC
CTCTTAG

Translation (328 aa):
MVTRLYFSTKEGGERSVCLSFAFLFLLLAMLVQVVREETLELGLEPGLASMTQHLEPILKKQDWDWTLPV
IKLAIRLGLAVLGSLLGAFLIFPGLRLAQTHQDALTLSADRPLLQLLLHTSFLSPLCTLWLWTKPVARDF
LYQAPTRNMTFSVPSEGAFDSLRLWVLVALCLLRLAVTRPHLQAYLCLAKARVEQLRKEAGRIEAREIQQ
RVVRVYCYVTVVSLQYLTPLILTLHCTLLLKTLGGYSWALSSTPPPLAPSQPSEALIPVDPAGDEAQQTA
AQVAGILGGLLTPLFLRGMLAYIIWWTAACQLLSSLFGLYFHQHLAAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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