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Report for CCDS8084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8084.1 Public Homo sapiens 11 EHD1 24 110 108 CCDS HistoryNCBI Gene:10938Re-query CCDS DB by CCDS ID:8084.1Re-query CCDS DB by GeneID:10938See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8084.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320631.8 ENSP00000320516.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320631.8Link to Ensembl Protein Viewer:ENSP00000320516.3Re-query CCDS DB by Nucleotide ID:ENST00000320631Re-query CCDS DB by Protein ID:ENSP00000320516
Original member Current member EBI ENST00000359393.6 ENSP00000352354.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359393.6Link to Ensembl Protein Viewer:ENSP00000352354.2Re-query CCDS DB by Nucleotide ID:ENST00000359393Re-query CCDS DB by Protein ID:ENSP00000352354
Original member Current member NCBI NM_001282444.2 NP_001269373.1 Accepted alive Link to Nucleotide Sequence:NM_001282444.2Link to Protein Sequence:NP_001269373.1Re-query CCDS DB by Nucleotide ID:NM_001282444Re-query CCDS DB by Protein ID:NP_001269373Link to BLAST:NP_001269373.1
Original member Current member NCBI NM_006795.4 NP_006786.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006795.4Link to Protein Sequence:NP_006786.2Re-query CCDS DB by Nucleotide ID:NM_006795Re-query CCDS DB by Protein ID:NP_006786Link to BLAST:NP_006786.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269373.1 534 Q9H4M9 534 100% 0 0
NP_006786.2 534 Q9H4M9 534 100% 0 0

Chromosomal Locations for CCDS 8084.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64854333 64854857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64855322 64855486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64859924 64860336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64874421 64874518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64878061 64878464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGTTCAGCTGGGTCAGCAAGGATGCCCGCCGCAAGAAGGAGCCGGAGCTCTTCCAGACGGTGGCTGAGG
GGCTGCGGCAGCTGTACGCGCAGAAGCTGCTACCCCTGGAGGAGCACTACCGCTTCCACGAGTTCCACTC
GCCCGCGCTGGAGGACGCTGACTTCGACAACAAGCCTATGGTGCTCCTCGTGGGGCAGTACAGCACGGGC
AAGACCACCTTCATCCGACACCTGATCGAGCAGGACTTCCCGGGGATGCGCATCGGGCCCGAGCCCACCA
CCGACTCCTTCATCGCCGTCATGCACGGCCCCACTGAGGGCGTGGTGCCGGGCAACGCGCTCGTGGTGGA
CCCGCGGCGCCCCTTCCGCAAGCTCAACGCGTTTGGCAACGCTTTCCTCAACAGGTTCATGTGTGCCCAG
CTGCCCAACCCCGTCCTGGACAGCATCAGCATCATCGACACCCCCGGGATCCTGTCTGGAGAGAAGCAGC
GGATCAGCAGAGGCTATGACTTTGCAGCCGTCCTGGAGTGGTTCGCGGAGCGTGTGGACCGCATCATCCT
GCTCTTCGACGCCCACAAGCTGGACATCTCCGATGAGTTCTCGGAAGTGATCAAGGCTCTGAAGAACCAT
GAGGACAAGATCCGCGTGGTGCTGAACAAGGCAGACCAGATCGAGACGCAGCAGCTGATGCGGGTGTACG
GGGCCCTCATGTGGTCCCTGGGCAAGATCATCAACACCCCCGAGGTGGTCAGGGTCTACATCGGCTCCTT
CTGGTCCCACCCGCTCCTCATCCCCGACAACCGCAAGCTCTTTGAGGCCGAGGAGCAGGACCTCTTCAAG
GACATCCAGTCACTGCCCCGAAACGCCGCCCTCAGGAAGCTCAATGACCTGATCAAGCGGGCACGGCTGG
CCAAGGTTCACGCCTACATCATCAGCTCCCTCAAGAAAGAGATGCCCAATGTCTTTGGTAAAGAGAGCAA
AAAGAAAGAGCTGGTGAACAACCTCGGAGAGATCTACCAGAAGATTGAGCGCGAGCACCAGATCTCCCCT
GGGGACTTCCCGAGCCTCCGCAAGATGCAGGAACTCCTGCAGACCCAGGACTTCAGCAAGTTCCAGGCGC
TGAAGCCCAAGCTGCTGGACACGGTGGATGACATGCTGGCCAACGACATCGCGCGGCTGATGGTGATGGT
GCGGCAGGAGGAGTCCCTGATGCCTTCCCAGGTGGTCAAGGGCGGCGCCTTTGACGGCACCATGAACGGG
CCGTTCGGGCACGGCTACGGCGAGGGGGCCGGCGAGGGCATCGACGACGTGGAGTGGGTGGTGGGCAAGG
ACAAGCCCACCTACGACGAGATCTTCTACACGCTGTCCCCTGTCAACGGCAAGATCACGGGCGCCAACGC
CAAGAAGGAGATGGTGAAGTCCAAGCTCCCCAACACCGTGCTAGGGAAGATCTGGAAGCTGGCCGACGTG
GACAAGGACGGGCTGCTGGACGACGAGGAGTTCGCGCTGGCCAACCACCTCATCAAGGTCAAGCTGGAGG
GCCACGAGCTGCCCGCCGACCTGCCCCCGCACCTGGTGCCGCCCTCCAAGCGCAGACATGAGTGA

Translation (534 aa):
MFSWVSKDARRKKEPELFQTVAEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTG
KTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPTEGVVPGNALVVDPRRPFRKLNAFGNAFLNRFMCAQ
LPNPVLDSISIIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNH
EDKIRVVLNKADQIETQQLMRVYGALMWSLGKIINTPEVVRVYIGSFWSHPLLIPDNRKLFEAEEQDLFK
DIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPNVFGKESKKKELVNNLGEIYQKIEREHQISP
GDFPSLRKMQELLQTQDFSKFQALKPKLLDTVDDMLANDIARLMVMVRQEESLMPSQVVKGGAFDGTMNG
PFGHGYGEGAGEGIDDVEWVVGKDKPTYDEIFYTLSPVNGKITGANAKKEMVKSKLPNTVLGKIWKLADV
DKDGLLDDEEFALANHLIKVKLEGHELPADLPPHLVPPSKRRHE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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