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Report for CCDS80618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80618.1 Public Mus musculus 6 Clec2i 23 108 98 CCDS HistoryNCBI Gene:93675Re-query CCDS DB by CCDS ID:80618.1Re-query CCDS DB by GeneID:93675See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80618.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162666.3 ENSMUSP00000124910.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162666.3Link to Ensembl Protein Viewer:ENSMUSP00000124910.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162666Re-query CCDS DB by Protein ID:ENSMUSP00000124910
Original member Current member NCBI NM_001289706.1 NP_001276635.1 Accepted alive Link to Nucleotide Sequence:NM_001289706.1Link to Protein Sequence:NP_001276635.1Re-query CCDS DB by Nucleotide ID:NM_001289706Re-query CCDS DB by Protein ID:NP_001276635Link to BLAST:NP_001276635.1

Chromosomal Locations for CCDS 80618.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128887635 128887666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128888030 128888104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128892828 128892910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128893616 128893741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128894669 128894847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128895327 128895433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128896412 128896550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGCCAGATTGCTTGGAGACAGGAGAAAAACTGCTCCCACAGCACTCCCCCTTCCCCAAACCTCCAAGCT
TTTGGAATTTCTCTCTTCCCAAGGACACGGGTATCAGGTTTGTACATAACATGAATGCCCAGTGTGTACA
GAAGCCAGAAGAGGGCAATGGACCCCTTGGAACTGGAGGTGTGCAATGTTGTAAAATTGTCCAAGGAAAA
TGTTTCAGAATCATCTCCACTGTGTCTCCTGTTAAACTTTACTGCTGCTATGGAGTGATCATGGTCCTCA
CTGTAGCTGTAATTGCTCTTTCTGTTGCTTTGTCAACAAAAAAGACAGAACAGATCATAATCAACAAGAC
CTATGCTGCTTGCTCAAAAAACTGGACTGGAGTTGGAAATAAATGTTTTTATTTTTCTGGATACCCACGT
AACTGGACATTTGCCCAGGCCTTCTGCATGGCACAAGAGGCCCAACTAGCTCGGTTTGACAACGAGGAGG
AGCTGATTTTCCTAAAGAGATTCAAGGGGGATTTTGATTGCTGGATTGGCCTGCACAGAGAGTCGTCAGA
GCACCCTTGGAAGTGGACAAACAACACTGAGTATAACAACATGAATCCCATCCTAGGAGTGGGAAGATAT
GCCTACCTGAGCAGCGATAGGATCAGCAGTTCGAGGAGCTATATAAATCGGATGTGGATCTGTAGCAAGC
TCAACAACTATAACCTCCATTGCCAAACTCCTCCTGTCTAG

Translation (246 aa):
MPDCLETGEKLLPQHSPFPKPPSFWNFSLPKDTGIRFVHNMNAQCVQKPEEGNGPLGTGGVQCCKIVQGK
CFRIISTVSPVKLYCCYGVIMVLTVAVIALSVALSTKKTEQIIINKTYAACSKNWTGVGNKCFYFSGYPR
NWTFAQAFCMAQEAQLARFDNEEELIFLKRFKGDFDCWIGLHRESSEHPWKWTNNTEYNNMNPILGVGRY
AYLSSDRISSSRSYINRMWICSKLNNYNLHCQTPPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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