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Report for CCDS80509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80509.1 Public Mus musculus 6 Klhdc10 23 108 98 CCDS HistoryNCBI Gene:76788Re-query CCDS DB by CCDS ID:80509.1Re-query CCDS DB by GeneID:76788See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068240.12 ENSMUSP00000064594.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068240.12Link to Ensembl Protein Viewer:ENSMUSP00000064594.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000068240Re-query CCDS DB by Protein ID:ENSMUSP00000064594
Original member Current member NCBI NM_001311087.1 NP_001298016.1 Accepted alive Link to Nucleotide Sequence:NM_001311087.1Link to Protein Sequence:NP_001298016.1Re-query CCDS DB by Nucleotide ID:NM_001311087Re-query CCDS DB by Protein ID:NP_001298016Link to BLAST:NP_001298016.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001298016.1 410 Q6PAR0-2 410 100% 0 0

Chromosomal Locations for CCDS 80509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30401994 30402150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30439644 30439865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30441777 30441931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30444427 30444575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30446618 30446702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30447411 30447477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30447941 30447988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30449491 30449630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30450487 30450696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGTCGGCTGCCCAGGGCTGGGACCGGAACCGCCGGCGGGGAGGAGGCGCGGCCGGCGGGGCCAGCGGGG
TTAGCGGGGCCGGCGCGGCCGGCGGGGGTCGGGGCACCGGACAGCTCAACCGATTCGTGCAGCTCTCGGG
ACGGCCGCACCTGCCAGGCCACAGACCTCCCCCAGCCCGCAGTGGACACCGTTGTGTGGCAGACAATACC
AATCTCTATGTGTTTGGAGGGTATAACCCAGACTATGATGAATCGGGAGGGCCGGATAACGAAGACTACC
CTCTCTTCAGGGAGCTTTGGCGGTATCATTTTGCAACAGGCGTGTGGCACCAGATGGGTACAGATGGCTA
CATGCCCCGGGAATTGGCATCAATGTCACTTGTGCTGCATGGAAACAACCTGTTAGTGTTCGGAGGTACA
GGCATCCCGTTTGGTGAGAGCAACGGCAATGACGTCCATGTCTGCAATGTGAAGTACAAGAGATGGGCTC
TACTCAGCTGTCGGGGGAAGAGGCCCAGCCGTATATACGGACAGGCCATGGCCCTCATCAATGGGTCCCT
TTATGTCTTTGGGGGAACAACCGGCTACATCTATAGCACAGACCTGCACAAGTTAGATCTCAACACCATG
GTGTGGACACAACTCAAACCAAACAACCTGTCCTGTGACCTGCCGGAGGAGAGGTACAGACATGAAATTG
CTCATGACGGGCAGAGGATTTACATCTTGGGAGGAGGTACTTCCTGGACAGCCTATTCCTTAAACAAGAT
CCATGCATACAACCTTGAAACAAATGCATGGGAGGAGATCGCAACAAAACCTCATGAAAAAATAGGTTTT
CCTGCAGCCCGACGATGTCACAGTTGTGTTCAAATTAAAAATGATGTCTTCATTTGTGGGGGCTATAATG
GAGAAGTGATCCTGGGAGACATCTGGAAGCTGAATCTGCAGACGTTTCAGTGGGTGAAGCTCCCTGCCAC
CATGCCAGAGCCCGTTTACTTTCACTGTGCGGCTGTCACTCCTGCTGGTTGCATGTACATCCACGGAGGA
GTGGTGAACATCCATGAAAACAAACGGACTGGGTCGCTGTTTAAGATCTGGCTGGTGGTACCTAGCCTGC
TGGAACTGGCATGGGAGAAGCTGCTCGCGGCCTTCCCCAACCTAGCAAACCTCTCCCGAACACAGCTCCT
GCACCTTGGACTCACACAGGAACTCATCGAGCGTTTGAAATGA

Translation (410 aa):
MSAAQGWDRNRRRGGGAAGGASGVSGAGAAGGGRGTGQLNRFVQLSGRPHLPGHRPPPARSGHRCVADNT
NLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQMGTDGYMPRELASMSLVLHGNNLLVFGGT
GIPFGESNGNDVHVCNVKYKRWALLSCRGKRPSRIYGQAMALINGSLYVFGGTTGYIYSTDLHKLDLNTM
VWTQLKPNNLSCDLPEERYRHEIAHDGQRIYILGGGTSWTAYSLNKIHAYNLETNAWEEIATKPHEKIGF
PAARRCHSCVQIKNDVFICGGYNGEVILGDIWKLNLQTFQWVKLPATMPEPVYFHCAAVTPAGCMYIHGG
VVNIHENKRTGSLFKIWLVVPSLLELAWEKLLAAFPNLANLSRTQLLHLGLTQELIERLK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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