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Report for CCDS80506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80506.1 Public Mus musculus 6 Tspan33 23 108 98 CCDS HistoryNCBI Gene:232670Re-query CCDS DB by CCDS ID:80506.1Re-query CCDS DB by GeneID:232670See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80506.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115250.3 ENSMUSP00000110905.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115250.3Link to Ensembl Protein Viewer:ENSMUSP00000110905.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115250Re-query CCDS DB by Protein ID:ENSMUSP00000110905
Original member Current member NCBI NM_001301407.1 NP_001288336.1 Accepted alive Link to Nucleotide Sequence:NM_001301407.1Link to Protein Sequence:NP_001288336.1Re-query CCDS DB by Nucleotide ID:NM_001301407Re-query CCDS DB by Protein ID:NP_001288336Link to BLAST:NP_001288336.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288336.1 282 Q8R3S2-2 282 100% 0 0

Chromosomal Locations for CCDS 80506.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29694443 29694544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29709941 29709998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29710590 29710714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29711016 29711090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29713439 29713534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29716705 29716833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29717190 29717351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29717537 29717638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGGCGCGGAGACCTGGCGTGCCGGCTGCCTACGGGGACGAGTTCTCCTTCGTCAGCCCGCTGGTGAAAT
ACCTGCTCTTCTTCTTCAACATGCTCTTCTGGGTAATCTCCATGGTCATGGTGGCCGTGGGTGTCTATGC
CAGGCTAATGAAGCACGCAGCAGCCTTGGCTTGTCTGGCGGTGGACCCTGCTATCCTGCTGATCGTGGTG
GGCGTCCTCATGTTCCTGCTCACCTTCTGCGGCTGTATCGGATCCCTTCGGGAGAACATCTGCCTTCTGC
AGACGTTCTCCCTCTGCCTCACCATCGTGTTCCTGCTGCAGCTGGCTGCTGGCATCCTGGGCTTCGTCTT
CTCAGACAAGGCTCGGGGGAAAGTGAGCGAGATCATCAACAATGCTATCGTGCATTATCGAGATGACCTG
GATCTGCAGAACCTCATCGACTTTGGCCAGAAGAAGTTCAGCTGCTGTGGAGGGATCTCCTACAGAGACT
GGTCTCAGAATATGTACTTCAACTGCTCGGAGGACAACCCTAGCCGGGAGCGCTGCTCTGTGCCTTATTC
CTGTTGCTTGCCCACCCCCAACCAGGCAGTGATCAACACGATGTGTGGCCAAGGTATGCAGGCTCTGGAC
TACTTGGAAGCTAGTAAGGTCATCTACACCAATGGCTGTATTGACAAGTTGGTCAACTGGATACACAGCA
ACCTGTTCCTGCTTGGTGGTGTGGCACTAGGCCTGGCCATCCCCCAGCTGGTGGGAATCCTGCTATCCCA
GGTCCTCGTGAATCAAATAAAAGATCAGATCAAGCTACAGCTCTACAACCAACAGCACCGAGCTGACCCG
TGGTACTGA

Translation (282 aa):
MARRPGVPAAYGDEFSFVSPLVKYLLFFFNMLFWVISMVMVAVGVYARLMKHAAALACLAVDPAILLIVV
GVLMFLLTFCGCIGSLRENICLLQTFSLCLTIVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDDL
DLQNLIDFGQKKFSCCGGISYRDWSQNMYFNCSEDNPSRERCSVPYSCCLPTPNQAVINTMCGQGMQALD
YLEASKVIYTNGCIDKLVNWIHSNLFLLGGVALGLAIPQLVGILLSQVLVNQIKDQIKLQLYNQQHRADP
WY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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