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Report for CCDS80486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80486.1 Public Mus musculus 6 Tac1 23 108 98 CCDS HistoryNCBI Gene:21333Re-query CCDS DB by CCDS ID:80486.1Re-query CCDS DB by GeneID:21333See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80486.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000184986.1 ENSMUSP00000138818.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184986.1Link to Ensembl Protein Viewer:ENSMUSP00000138818.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184986Re-query CCDS DB by Protein ID:ENSMUSP00000138818
Original member Current member NCBI NM_001311060.2 NP_001297989.1 Accepted alive Link to Nucleotide Sequence:NM_001311060.2Link to Protein Sequence:NP_001297989.1Re-query CCDS DB by Nucleotide ID:NM_001311060Re-query CCDS DB by Protein ID:NP_001297989Link to BLAST:NP_001297989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297989.1 115 P41539-2 115 100% 0 0

Chromosomal Locations for CCDS 80486.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 7555614 7555736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7556684 7556780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7557720 7557743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7559099 7559152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7562383 7562432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGAAAATCCTCGTGGCCGTGGCGGTCTTTTTTCTCGTTTCCACTCAACTGTTTGCAGAGGAAATCGATG
CCAACGATGATCTAAATTATTGGTCCGACTGGTCCGACAGTGACCAGATCAAGGAGGCAATGCCGGAGCC
CTTTGAGCATCTTCTGCAGAGAATCGCCCGAAGACCCAAGCCTCAGCAGTTCTTTGGATTAATGGGCAAG
CGGGATGCTGGACATGGCCAGATCTCTCACAAAAGGCATAAAACAGATTCCTTTGTTGGACTAATGGGCA
AAAGAGCTTTAAATTCTGTGGCTTATGAAAGAAGCGCGATGCAGAACTACGAAAGAAGACGTAAATAA

Translation (115 aa):
MKILVAVAVFFLVSTQLFAEEIDANDDLNYWSDWSDSDQIKEAMPEPFEHLLQRIARRPKPQQFFGLMGK
RDAGHGQISHKRHKTDSFVGLMGKRALNSVAYERSAMQNYERRRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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