NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80463.1 Public Mus musculus 5 Bud31 23 108 98 CCDS HistoryNCBI Gene:231889Re-query CCDS DB by CCDS ID:80463.1Re-query CCDS DB by GeneID:231889See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80463.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159018.7 ENSMUSP00000124999.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159018.7Link to Ensembl Protein Viewer:ENSMUSP00000124999.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159018Re-query CCDS DB by Protein ID:ENSMUSP00000124999
Original member Current member EBI ENSMUST00000160075.1 ENSMUSP00000125564.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160075.1Link to Ensembl Protein Viewer:ENSMUSP00000125564.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160075Re-query CCDS DB by Protein ID:ENSMUSP00000125564
Original member Current member EBI ENSMUST00000162594.7 ENSMUSP00000125738.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162594.7Link to Ensembl Protein Viewer:ENSMUSP00000125738.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162594Re-query CCDS DB by Protein ID:ENSMUSP00000125738
Original member Current member NCBI NM_001310770.1 NP_001297699.1 Accepted alive Link to Nucleotide Sequence:NM_001310770.1Link to Protein Sequence:NP_001297699.1Re-query CCDS DB by Nucleotide ID:NM_001310770Re-query CCDS DB by Protein ID:NP_001297699Link to BLAST:NP_001297699.1
Original member Current member NCBI NM_001310771.1 NP_001297700.1 Accepted alive Link to Nucleotide Sequence:NM_001310771.1Link to Protein Sequence:NP_001297700.1Re-query CCDS DB by Nucleotide ID:NM_001310771Re-query CCDS DB by Protein ID:NP_001297700Link to BLAST:NP_001297700.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297699.1 144 Q6PGH1-1 144 100% 0 0
NP_001297700.1 144 Q6PGH1-1 144 100% 0 0

Chromosomal Locations for CCDS 80463.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145142474 145142567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145144899 145145021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145146443 145146609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145147835 145147885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGCCCAAGGTCAAAAGAAGCCGGAAAGCACCTCCAGATGGCTGGGAGTTGATTGAACCAACGTTGGATG
AACTAGATCAAAAGATGAGAGAAGCTGAAACTGAACCCCATGAGGGAAAGAGGAAAGTGGAATCTCTGTG
GCCCATCTTCAGGATCCATCACCAGAAAACCCGCTATATCTTCGACCTCTTTTACAAGAGGAAAGCCATA
AGCAGAGAACTCTATGAATACTGCATTAAAGAAGGCTATGCAGACAAAAACCTGATTGCAAAGTGGAAGA
AGCAGGGCTATGAGAACCTATGCTGCCTACGCTGCATTCAGACTCGGGACACCAACTTTGGCACCAACTG
CATTTGCCGGGTTCCCAAAAGCAAGCTGGAAGTGGGTCGCATCATCGAGTGCACACACTGTGGCTGCCGG
GGTTGCTCTGGCTGA

Translation (144 aa):
MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYIFDLFYKRKAI
SRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICRVPKSKLEVGRIIECTHCGCR
GCSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH