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Report for CCDS80288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80288.1 Public Mus musculus 5 Lias 23 108 98 CCDS HistoryNCBI Gene:79464Re-query CCDS DB by CCDS ID:80288.1Re-query CCDS DB by GeneID:79464See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80288.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031101.9 ENSMUSP00000031101.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031101.9Link to Ensembl Protein Viewer:ENSMUSP00000031101.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031101Re-query CCDS DB by Protein ID:ENSMUSP00000031101
Original member Current member NCBI NM_001310612.1 NP_001297541.1 Accepted alive Link to Nucleotide Sequence:NM_001310612.1Link to Protein Sequence:NP_001297541.1Re-query CCDS DB by Nucleotide ID:NM_001310612Re-query CCDS DB by Protein ID:NP_001297541Link to BLAST:NP_001297541.1

Chromosomal Locations for CCDS 80288.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 65393978 65394034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65395365 65395445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65397603 65397759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65397831 65397888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65399847 65399975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65402611 65402756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65404168 65404238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65405330 65405441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65408735 65408793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGGTAAAAACTACAATAAACTGAAAAATACATTGCGGAATTTAAGTCTCCACACAGTGTGTGAGGAAG
CCCGGTGCCCCAACATTGGAGAGTGTTGGGGAGGTGGGGAATATGCCACAGCCACAGCCACGATCATGTT
GATGGGGGACACATGCACAAGAGGTTGCAGATTTTGTTCCGTTAAGACCGCAAGAAATCCCCCTCCATTG
GATGCCAATGAGCCCGACAATACGGCCAAAGCAATTGCAGAGTGGGGTCTGGATTATGTTGTCCTGACGT
CGGTGGATCGAGATGATGTGGCCGACGGGGGAGCTGAGCACATCGCCAAGACCGTGTCATGCTTGAAGGA
AAGGAATCCAAAAATCCTCGTGGAATGCCTCACCCCAGACTTCCGAGGTGATCTGAGAGCAGTGGAGAAG
GTGGCTCTGTCTGGATTAGATGTGTATGCACACAATGTGGAGACTGTCCCCGAGTTACAGAGGAAAGTTC
GTGATCCCCGGGCCAATTTTGACCAGTCTCTTCGTGTACTGAGACATGCCAAGGAGGTCCAGCCTGATGT
TGTTTCCAAAACATCGATAATGCTGGGCCTTGGTGAGACAGACGAGCAAGTCTATGCCACACTGAAAGCT
CTCCGTGCGGCCGACGTGGACTGTTTAACTCTAGGGCAGTACATGCAGCCAACGAAGCGCCACCTTAAGG
TTGAAGAATATGTTACTCCTGAGAAGTTCAAATACTGGGAAAAAGTAGGGAATGAACTTGGATTTCTCTA
TACGGCAAGTGGTCCTTTGGTGCGATCTTCATATAAAGCAGGTGAATTTTTCCTGAAAAATCTAGTGGCT
AGAAGAAAAACAAAAGCTTCTAAAGTGTAG

Translation (289 aa):
MGKNYNKLKNTLRNLSLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPL
DANEPDNTAKAIAEWGLDYVVLTSVDRDDVADGGAEHIAKTVSCLKERNPKILVECLTPDFRGDLRAVEK
VALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLRHAKEVQPDVVSKTSIMLGLGETDEQVYATLKA
LRAADVDCLTLGQYMQPTKRHLKVEEYVTPEKFKYWEKVGNELGFLYTASGPLVRSSYKAGEFFLKNLVA
RRKTKASKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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