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Report for CCDS80258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80258.1 Public Mus musculus 5 Tacc3 23 108 98 CCDS HistoryNCBI Gene:21335Re-query CCDS DB by CCDS ID:80258.1Re-query CCDS DB by GeneID:21335See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80258.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074849.12 ENSMUSP00000074394.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074849.12Link to Ensembl Protein Viewer:ENSMUSP00000074394.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074849Re-query CCDS DB by Protein ID:ENSMUSP00000074394
Original member NCBI NM_001310541.1 NP_001297470.1 Updated not alive Link to Nucleotide Sequence:NM_001310541.1Link to Protein Sequence:NP_001297470.1Re-query CCDS DB by Nucleotide ID:NM_001310541Re-query CCDS DB by Protein ID:NP_001297470
Current member NCBI NM_001310541.2 NP_001297470.1 Accepted alive Link to Nucleotide Sequence:NM_001310541.2Link to Protein Sequence:NP_001297470.1Re-query CCDS DB by Nucleotide ID:NM_001310541Re-query CCDS DB by Protein ID:NP_001297470Link to BLAST:NP_001297470.1

Chromosomal Locations for CCDS 80258.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33661223 33661384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33661521 33661645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33663821 33663902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33664267 33664855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33666693 33666745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33667043 33667167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33667963 33668053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33668134 33668235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33668662 33668738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33668818 33668861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33669478 33669647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33671404 33671510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33671665 33671785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33671982 33672047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGAGTCTGCATGTCTTAAATGACGAAAACGTGCCCAATGAAAAGAGTTCACAGTGCCGTGATTTCCAGT
TTTTGCCACCAGAACTTACCGGCAGATCATCTGTTCTTTGTCTGTCACAGAAAGAAAATGTACCACCCCA
GAGCCAGGCTAAGGCCACAAATGTGACGTTCCAGACACCACCTCGGGATCCACAGACACACAGGATCTTA
AGTCCTAACATGACCAATAAGCGTGAGGCTCCTTTTGGATTACAAAATGACCACTGTGTCTTCTTACAGA
AAGAAAACCAGCGGCCTTTAGCCCCAGTGGATGATGCACCTGTGGTTCAAATGGCAGCTGAGATCCTAAG
AGCAGAAGGCGAGTTACAGGAGGGAATCTTGACTTCCTCAAGCCTTTCAGCTTCCACAAGTCTTCTGGAC
AGTGAGCTGGTGACCCCTCCTATCGAGCCAGTGCTGGAGCCTTCCCATCAGGGACTAGAACCTGTCTTGG
AAAGTGAGCTGGTGACCCCTCCTGTTGAGCCAGTGCTGGAGCCTTCCCATCAGGAACTAGAACCTGTCTT
GGAAAGTGAGCTGGTGACCCCTCCTATTGAGCCAGTGCTGGAGCCTTCCCATCAGGGACTAGAACCTGTC
TTGGACAGTGAGCTGGTGACCCCTCCTATTGAGCCAGTGCTGGAGCCTTCCCATCAGGGACTAGAACCTG
TCTTAGAAAGTGAGCTGGTGACCCCTCCTATTGAGCCAGTGCTGGAGCCTTCCCATCAGGGACTAGAACC
TGTCTTGGACAGTGAGCTGGTGACCCCTCCTATTGAGCCAGTGCTGGAGCCTTCCCATCAGGGACTAGAA
CCTGTCTTGGACAGTGAGCTGGTGACCCCTCCTATCGAGCCTTTGCTGGAGCCTTCCCATCAGGGACTAG
AACCTGTCGTGGATCTAAAGGAAGAGAGCTTCAGAGACCCATCAGAAGTCCTAGGTACTGGTGCTGAAGT
GGATTATCTGGAGCAGTTTGGAACTTCCTCGTCCCATCTCTCCAACTCTCAGTTTAAGGAGTCGGCCTGG
AGGAAGCAGTCTTTGTACGTGAAATTTGACCCTCTTCTGAAAGACAGCCCTTTGCGGCCAATGCCGGTGG
CCCCAATAACAAATAGTACACAGGATACAGAGGAGGAGTCTGGTTCTGGAAAGCCGACAGAAGCTGAGCT
TGTCAACTTAGATTTCTTGGGAGATTTGGATGTTCCGGTATCTGCCCCACCCCTGTGTGTCCTTGAGCCT
CGAGGTCTCCTTCCTGCTGAGCCTATTGTGGATGTGCTGAAGTACAGCCAGAAAGACCTGGATGCAGTGG
TGAATGTGATGCAGCAGGAGAACTTGGAGCTGAAAAGCAAGTATGAGGACCTCAACACAAAATATTTGGA
GATGGGGAAGTCCGTTGATGAGTTTGAGAAGATCGCGTACAAATCATTGGAGGAGGCTGAGAAACAGAGG
GAACTAAAGGAAATAGCTGAAGACAAAATCCAAAAGGTTTTAAAAGAGAGAGACCAACTTAATGCAGACC
TGAACTCCATGGAAAAGTCCTTTTCTGACCTTTTCAAACGGTTTGAGAAGCGGAAGGAAGTGATTGAAGG
CTACCAGAAGAATGAAGAGTCACTGAAGAAGTATGTTGGGGAATGCATAGTGAAAATTGAAAAAGAAGGC
CAGAGGTACCAGGCGCTGAAGATCCATGCAGAAGAAAAGCTCAGGCTGGCAAATGAGGAGATCGCCCAGG
TACACAGCAAGGCCCAAGCAGAGGTACTGGCTTTGCAGGCAAGCCTGAGGAAGGCACAAATGCAGAACCA
CTCGCTGGAGATGACTCTGGAGCAGAAGACAAAAGAAATTGATGAGCTGACCCGGATCTGTGATGACCTC
ATCTCTAAGATGGAGAAGATCTGA

Translation (637 aa):
MSLHVLNDENVPNEKSSQCRDFQFLPPELTGRSSVLCLSQKENVPPQSQAKATNVTFQTPPRDPQTHRIL
SPNMTNKREAPFGLQNDHCVFLQKENQRPLAPVDDAPVVQMAAEILRAEGELQEGILTSSSLSASTSLLD
SELVTPPIEPVLEPSHQGLEPVLESELVTPPVEPVLEPSHQELEPVLESELVTPPIEPVLEPSHQGLEPV
LDSELVTPPIEPVLEPSHQGLEPVLESELVTPPIEPVLEPSHQGLEPVLDSELVTPPIEPVLEPSHQGLE
PVLDSELVTPPIEPLLEPSHQGLEPVVDLKEESFRDPSEVLGTGAEVDYLEQFGTSSSHLSNSQFKESAW
RKQSLYVKFDPLLKDSPLRPMPVAPITNSTQDTEEESGSGKPTEAELVNLDFLGDLDVPVSAPPLCVLEP
RGLLPAEPIVDVLKYSQKDLDAVVNVMQQENLELKSKYEDLNTKYLEMGKSVDEFEKIAYKSLEEAEKQR
ELKEIAEDKIQKVLKERDQLNADLNSMEKSFSDLFKRFEKRKEVIEGYQKNEESLKKYVGECIVKIEKEG
QRYQALKIHAEEKLRLANEEIAQVHSKAQAEVLALQASLRKAQMQNHSLEMTLEQKTKEIDELTRICDDL
ISKMEKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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