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Report for CCDS8006.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8006.2 Public Homo sapiens 11 CPSF7 24 110 108 CCDS HistoryNCBI Gene:79869Re-query CCDS DB by CCDS ID:8006.2Re-query CCDS DB by GeneID:79869See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 8006.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data with the same 5' splice pattern. The protein with the shorter N-terminus is encoded by a variant with an alternative 5' splice pattern, as in NM_001136040.2.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8006.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340437.8 ENSP00000345412.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340437.8Link to Ensembl Protein Viewer:ENSP00000345412.4Re-query CCDS DB by Nucleotide ID:ENST00000340437Re-query CCDS DB by Protein ID:ENSP00000345412
Original member Current member NCBI NM_024811.4 NP_079087.3 Accepted alive Link to Nucleotide Sequence:NM_024811.4Link to Protein Sequence:NP_079087.3Re-query CCDS DB by Nucleotide ID:NM_024811Re-query CCDS DB by Protein ID:NP_079087Link to BLAST:NP_079087.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079087.3 514 Q8N684-3 514 100% 0 0

Chromosomal Locations for CCDS 8006.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61410943 61411105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61411769 61411937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61415666 61415784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61416105 61416519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61419922 61420094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61420470 61420573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61421390 61421608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61429182 61429290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61429757 61429830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGGACGGCCGGAGTCTGCGGGCGGAGGGAGTCGCGGGCCTTTTGAGGGAGGAGGCAGAGCGCGCCGGG
CCGGTGGCATCTTCCTTACTTTGTCCATCCTCCGGACTCGCGATCTTCCTTCCGGAGCCATGTCAGAAGG
AGTGGACTTGATTGATATATATGCTGACGAGGAGTTCAACCAGGACCCAGAGTTCAACAATACAGATCAG
ATTGACCTGTATGATGATGTGCTGACAGCCACCTCACAGCCCTCAGATGACAGAAGCAGCAGCACTGAAC
CACCTCCTCCTGTTCGCCAGGAGCCATCTCCCAAGCCCAACAACAAGACCCCTGCAATTCTGTATACCTA
CAGTGGCCTGCGTAATAGACGAGCTGCCGTTTATGTGGGCAGCTTCTCCTGGTGGACCACAGACCAGCAG
CTGATCCAGGTTATTCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGAGCAA
ATGGCCAGTCCAAAGGGTATGCTGAGGTGGTGGTAGCCTCTGAAAACTCTGTCCACAAATTGTTGGAACT
CCTACCAGGGAAAGTTCTTAATGGAGAAAAAGTGGACGTGAGGCCGGCCACCCGGCAGAACCTGTCACAG
TTTGAGGCACAGGCTCGGAAACGTGAGTGTGTCCGAGTCCCAAGAGGGGGAATACCTCCACGGGCCCATT
CCCGAGATTCTAGTGATTCTGCTGATGGACGGGCCACACCCTCTGAGAACCTTGTACCCTCATCTGCTCG
TGTGGATAAGCCCCCCAGTGTGCTGCCCTACTTCAATCGTCCTCCTTCGGCCCTTCCCCTGATGGGTCTG
CCCCCACCACCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGGGTCCCTCCTCCTCCTCCTGGTA
TCCACTACCAGCATCTCATGCCCCCACCTCCTCGATTACCTCCTCATCTTGCTGTACCTCCCCCTGGGGC
CATCCCACCTGCCCTTCACCTCAATCCAGCCTTCTTCCCCCCACCAAACGCTACAGTGGGGCCTCCACCA
GATACTTACATGAAGGCCTCTGCCCCCTATAACCACCATGGCAGCCGAGATTCGGGCCCTCCACCCTCTA
CAGTGAGTGAAGCCGAATTTGAAGATATCATGAAGCGAAACAGAGCAATTTCCAGCAGTGCCATTTCCAA
AGCAGTATCTGGAGCCAGTGCAGGGGATTACAGTGACGCAATTGAGACGCTGCTCACAGCCATTGCGGTT
ATCAAACAGTCCCGGGTTGCCAATGATGAGCGTTGCCGTGTCCTCATCTCCTCTCTTAAGGACTGTCTTC
ATGGCATCGAAGCCAAGTCCTACAGTGTGGGTGCCAGTGGGAGCTCTTCCAGGAAAAGACATCGCTCCCG
GGAAAGGTCACCTAGCCGGTCCCGGGAGAGCAGCAGGAGGCACCGGGATCTGCTTCATAATGAAGATCGG
CATGATGATTATTTCCAAGAAAGGAACCGGGAGCATGAGAGACACCGGGATAGAGAACGGGACCGGCACC
ACTGA

Translation (514 aa):
MGRPESAGGGSRGPFEGGGRARRAGGIFLTLSILRTRDLPSGAMSEGVDLIDIYADEEFNQDPEFNNTDQ
IDLYDDVLTATSQPSDDRSSSTEPPPPVRQEPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQ
LIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQ
FEAQARKRECVRVPRGGIPPRAHSRDSSDSADGRATPSENLVPSSARVDKPPSVLPYFNRPPSALPLMGL
PPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLAVPPPGAIPPALHLNPAFFPPPNATVGPPP
DTYMKASAPYNHHGSRDSGPPPSTVSEAEFEDIMKRNRAISSSAISKAVSGASAGDYSDAIETLLTAIAV
IKQSRVANDERCRVLISSLKDCLHGIEAKSYSVGASGSSSRKRHRSRERSPSRSRESSRRHRDLLHNEDR
HDDYFQERNREHERHRDRERDRHH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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