NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80059.1 Public Mus musculus 3 Adgrl2 23 108 98 CCDS HistoryNCBI Gene:99633Re-query CCDS DB by CCDS ID:80059.1Re-query CCDS DB by GeneID:99633See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197567.4 ENSMUSP00000143626.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197567.4Link to Ensembl Protein Viewer:ENSMUSP00000143626.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197567Re-query CCDS DB by Protein ID:ENSMUSP00000143626
Original member NCBI NM_001081298.1 NP_001074767.1 Updated not alive Link to Nucleotide Sequence:NM_001081298.1Link to Protein Sequence:NP_001074767.1Re-query CCDS DB by Nucleotide ID:NM_001081298Re-query CCDS DB by Protein ID:NP_001074767
Current member NCBI NM_001081298.2 NP_001074767.1 Accepted alive Link to Nucleotide Sequence:NM_001081298.2Link to Protein Sequence:NP_001074767.1Re-query CCDS DB by Nucleotide ID:NM_001081298Re-query CCDS DB by Protein ID:NP_001074767Link to BLAST:NP_001074767.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074767.1 1487 Q8JZZ7-1 1487 99.731% 0 4

Chromosomal Locations for CCDS 80059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 148817174 148817928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148821280 148821408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148822955 148823051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148823696 148823824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148826365 148826533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148827212 148827238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148827541 148827585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148828477 148828568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148833862 148833928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148835304 148835524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148836352 148836561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148837564 148837737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148839109 148839314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148839645 148839770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148846849 148847032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148849766 148849804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148850836 148851021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148851895 148851998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148852567 148852860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148858733 148859533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148860427 148860438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148865600 148865709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148890412 148890625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 148954563 148954635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4464 nt):
ATGGTGTCTTCTGGCTGCAGAATGCGAAGTCTGTGGTTTATCATTATAATCAGTTTCTCACCGAGTACAG
AAGGTTTCAGCAGAGCAGCCTTACCATTCGGGTTAGTTAGACGAGAGCTATCCTGTGAGGGTTATTCTAT
AGACCTGCGATGTCCGGGCAGTGACGTCATCATGATCGAGAGTGCGAACTACGGTCGGACGGACGACAAG
ATCTGCGATGCAGACCCCTTTCAAATGGAGAACACAGACTGCTACCTCCCTGATGCCTTCAAAATCATGA
CTCAAAGGTGCAACAATCGAACACAGTGTATAGTAGTTACCGGGTCAGATGTATTTCCTGATCCATGTCC
CGGAACTTACAAATACCTTGAAGTTCAATATGAATGTGTCCCTTACATGGAGCAAAAAGTCTTTGTGTGT
CCTGGAACCTTGAAAGCAATTGTGGACTCACCATGTATATATGAAGCTGAGCAGAAGTCAGGGGCTTGGT
GCAAGGACCCCCTTCAGGCTGCAGATAAAATTTATTTTATGCCCTGGACTCCCTACCGCACCGATACGTT
AATAGAATATGCCTCTTTAGAAGATTTTCAAAACAGCCGCCAGACAACAACATACAAACTTCCAAACCGA
GTAGACGGTACTGGATTTGTGGTGTATGATGGAGCCGTCTTCTTTAACAAGGAAAGAACCAGAAACATTG
TTAAGTTTGACTTGAGGACTAGAATCAAGAGCGGCGAGGCTATCATCAACTATGCCAACTACCACGATAC
GTCACCCTACAGATGGGGTGGGAAGACAGACATTGACCTCGCAGTGGATGAGAACGGCTTATGGGTCATT
TATGCCACGGAGCAGAACAATGGAATGATCGTGATCAGCCAGCTCAACCCTTACACTCTTCGATTCGAGG
CAACCTGGGAGACAGCGTATGACAAGCGTGCGGCGTCCAATGCTTTCATGATATGTGGGGTTCTCTATGT
GGTCAGGTCAGTGTACCAAGACAATGAAAGCGAAGCAGGCAAGAACACCATTGACTACATCTACAACACG
CGACTAAGCCGGGGCGAGTACGTGGACGTTCCTTTTCCCAACCAGTACCAGTATATTGCTGCAGTGGATT
ATAATCCAAGAGACAACCAACTCTACGTATGGAACAATAACTTCATTTTACGGTATTCCCTGGAGTTTGG
TCCTCCTGACCCTGCCCAAGTGCCTACCACAGCTGTGACAATAACTTCTTCAGCTGAGCTGTTCAAAACC
ACAATATCCACCACGAGCAGTGCCTCCCAGCGAGGCCCCGTGAGCAGCACTGCAGCTGGTCCTCAGGACG
GAAGCAGAGGGACAAAGCCACCTCCAGCCGTCTCTACAACCAAAATTCCTCCTGTAACAAATATTTTTCC
CCTGCCAGAGAGATTCTGCGAAGCGTTAGACTGGAAGGGGATAAAGTGGCCTCAGACACAAAGGGGGATG
ATGGTTGAGCGACCCTGTCCCAAGGGAACAAGAGGGACGGCCTCGTATCTGTGCATGGCTTCCACGGGAA
CATGGAACCCGAAGGGCCCTGATCTTAGCAACTGCACGTCTCACTGGGTGAACCAGCTGGCCCAGAAGAT
CAGAAGTGGAGAGAATGCTGCGAGCCTGGCCAATGAACTAGCTAAGCACACCAAGGGGCATGTGTTTGCA
GGGGACGTGAGCTCCTCTGTGAGGCTGATGGAACAGTTGGTGGACATCCTGGATGCTCAGCTGCAGGAGC
TGAAGCCGAGTGAGAAGGATTCGGCTGGGAGGAGCTATAACAAGCTCCAAAAACGAGAGAAGACATGCAG
GGCTTACCTTAAGGCAATTGTGGACACGGTAGACAACCTTCTGAGAGCTGAGGCTTTGGAATCCTGGAAA
CACATGAATTCTTCAGAGCAGGCGCACACAGCCACAATGTTGTTGGATACCTTGGAAGAAGGAGCATTCG
TCCTAGCAGACAACCTTTTGGAACCAACCAGGGTCTCCATGCCAACAGAAAATATTGTTTTAGAAGTTGC
TGTCCTCAGCACGGAAGGGCAGGTCCAAGACTTTAAATTCCCTCTGGGCTTAAAGGGGTTGGGCAGCTCC
ATCCAGCTCTCTGCCAACACGGTCAAACAGAACAGCAGGAATGGGCTGGCCAAGCTGGTATTCATCATTT
ACCGGAGCCTGGGACAATTCCTAAGCACTGAGAACGCAACCATAAAGCTGGGTGCAGACCTCATGGGTCG
GAACAGCACCATTGCGGTGAACTCTCCCGTCATCTCCGTCTCCATCAATAAGGAGTCCAGCCGCGTGTAC
CTGACAGATCCCGTGCTTTTCACACTGCCACACATTGATCCTGACAATTATTTCAATGCAAACTGCTCCT
TCTGGAACTACTCAGAGAGAACCATGATGGGATATTGGTCTACCCAGGGCTGCAAGCTGGTTGACACTAA
TAAAACTCGCACAACGTGCGCTTGCAGCCACCTAACCAATTTTGCTATTCTCATGGCCCACAGGGAAATT
GCGTATAAAGATGGAGTGCACCACCTGTTGCTGACAGTCATCACCTGGGTGGGCATCGTTGTCTCCCTCG
TCTGCCTGGCTATCTGCATCTTCACCTTCTGTTTCTTCCGAGGGCTACAAAGTGACCGCAATACTATCCA
CAAGAACCTTTGTATCAACCTTTTCATTGCTGAATTTATTTTTCTCATCGGCATCGATAAGACAAAATAC
ACGATTGCATGCCCCGTGTTCGCAGGGCTTCTTCACTTTTTCTTCCTGGCTGCTTTTTCCTGGATGTGCC
TGGAAGGTGTGCAGCTCTACCTAATGTTGGTTGAGGTTTTCGAGAGCGAATATTCAAGGAAGAAATATTA
CTATGTCGCTGGGTACCTGTTCCCGGCCACAGTGGTCGGCGTCTCAGCAGCCATTGACTACAAGAGTTAC
GGGACAGTCCAGGCTTGCTGGCTTCACGTTGATAACTATTTCATATGGAGTTTCATCGGGCCTGTTACTT
TCATTATTCTGCTAAATATTATTTTCCTGGTGATCACGCTGTGCAAAATGGTGAAACATTCAAACACTCT
GAAACCAGATTCTAGCAGGTTGGAAAACATTAATAATTACCGTGTTTGTGATGGCTACTATAATACGGAC
TTACCTGGCTATGAAGATAATAAGCCATTTATCAAGTCTTGGGTACTTGGCGCGTTCGCCCTGCTGTGTC
TCCTGGGCCTCACCTGGTCCTTTGGGTTGCTTTTTGTTAACGAGGAGACTGTTGTCATGGCGTATCTCTT
CACCGCCTTTAATGCTTTCCAGGGACTCTTCATTTTCATCTTCCACTGTGCTCTTCAAAAGAAAGTACGA
AAAGAGTATGGCAAGTGCTTCAGACACTGGTACTGCTGTGGCGGCCTCCCGACCGAGAGCCCGCACAGCT
CTGTGAAGGCATCCACCACCCGCACCAGTGCTCGGTACTCCTCTGGCACACAGAGCCGTATAAGAAGGAT
GTGGAATGACACCGTGAGGAAGCAGTCTGAATCGTCTTTTATCTCAGGTGACATCAATAGCACTTCTACC
CTTAACCAAGGGATGACTGGCAATTACCTACTAACAAACCCTCTTCTCCGGCCCCACGGCACTAACAACC
CCTATAACACCCTGCTCGCTGAAACAGTTGTATGCAATGCCCCTTCAGCTCCTGCGTTTAACTCGCCAGG
ACATTCACTGAACAATGCCCGGGACACAAGTGCCATGGATACTCTACCGCTAAATGGTAACTTCAACAAC
AGCTATTCCCTGCGCAAGGCGGACTACCACGACGGCGTGCAGGTCGTGGACTGTGGACTAAGTCTGAACG
ACACCGCGTTTGAGAAAATGATCATTTCAGAGTTAGTGCACAACAACCTCCGGGGCGGCAACAAAACCCA
CAACTTGGAGCTCAAGCTCCCGGTTAAACCGGTGATTGGCGGCAGCAGCAGTGAAGATGACGCGATTGTG
GCTGACGCCTCATCTTTGATGCATGGTGACAACCCAGGGCTGGAGTTCCGCCACAAAGAGCTGGAGGCGC
CGCTCATCCCCCAGCGGACTCACTCGCTTCTGTACCAACCCCAGAAAAAAGTGAAGCCGGAGGCAACAGA
CAGCTACGTCTCCCAGCTGACGGCCGAGGCCGACGACCACCTCCAGTCCCCCAACAGAGACTCTCTGTAC
ACGAGCATGCCCAACCTAAGAGACTCTCCCTACCCGGAGAGCAGCCCAGACATGGCAGAGGACCTGTCTC
CCTCCAGGAGGAGTGAGAACGAGGACATTTACTATAAAAGTATGCCCAACCTTGGAGCTGGCCGCCATCT
CCACATGTGCTACCAGATCAGCAGGGGCAATAGCGATGGTTACATCATCCCCATTAACAAAGAAGGGTGC
ATCCCTGAGGGGGACGTCCGGGAAGGACAGATGCAGCTGGTGACAAGTCTTTAA

Translation (1487 aa):
MVSSGCRMRSLWFIIIISFSPSTEGFSRAALPFGLVRRELSCEGYSIDLRCPGSDVIMIESANYGRTDDK
ICDADPFQMENTDCYLPDAFKIMTQRCNNRTQCIVVTGSDVFPDPCPGTYKYLEVQYECVPYMEQKVFVC
PGTLKAIVDSPCIYEAEQKSGAWCKDPLQAADKIYFMPWTPYRTDTLIEYASLEDFQNSRQTTTYKLPNR
VDGTGFVVYDGAVFFNKERTRNIVKFDLRTRIKSGEAIINYANYHDTSPYRWGGKTDIDLAVDENGLWVI
YATEQNNGMIVISQLNPYTLRFEATWETAYDKRAASNAFMICGVLYVVRSVYQDNESEAGKNTIDYIYNT
RLSRGEYVDVPFPNQYQYIAAVDYNPRDNQLYVWNNNFILRYSLEFGPPDPAQVPTTAVTITSSAELFKT
TISTTSSASQRGPVSSTAAGPQDGSRGTKPPPAVSTTKIPPVTNIFPLPERFCEALDWKGIKWPQTQRGM
MVERPCPKGTRGTASYLCMASTGTWNPKGPDLSNCTSHWVNQLAQKIRSGENAASLANELAKHTKGHVFA
GDVSSSVRLMEQLVDILDAQLQELKPSEKDSAGRSYNKLQKREKTCRAYLKAIVDTVDNLLRAEALESWK
HMNSSEQAHTATMLLDTLEEGAFVLADNLLEPTRVSMPTENIVLEVAVLSTEGQVQDFKFPLGLKGLGSS
IQLSANTVKQNSRNGLAKLVFIIYRSLGQFLSTENATIKLGADLMGRNSTIAVNSPVISVSINKESSRVY
LTDPVLFTLPHIDPDNYFNANCSFWNYSERTMMGYWSTQGCKLVDTNKTRTTCACSHLTNFAILMAHREI
AYKDGVHHLLLTVITWVGIVVSLVCLAICIFTFCFFRGLQSDRNTIHKNLCINLFIAEFIFLIGIDKTKY
TIACPVFAGLLHFFFLAAFSWMCLEGVQLYLMLVEVFESEYSRKKYYYVAGYLFPATVVGVSAAIDYKSY
GTVQACWLHVDNYFIWSFIGPVTFIILLNIIFLVITLCKMVKHSNTLKPDSSRLENINNYRVCDGYYNTD
LPGYEDNKPFIKSWVLGAFALLCLLGLTWSFGLLFVNEETVVMAYLFTAFNAFQGLFIFIFHCALQKKVR
KEYGKCFRHWYCCGGLPTESPHSSVKASTTRTSARYSSGTQSRIRRMWNDTVRKQSESSFISGDINSTST
LNQGMTGNYLLTNPLLRPHGTNNPYNTLLAETVVCNAPSAPAFNSPGHSLNNARDTSAMDTLPLNGNFNN
SYSLRKADYHDGVQVVDCGLSLNDTAFEKMIISELVHNNLRGGNKTHNLELKLPVKPVIGGSSSEDDAIV
ADASSLMHGDNPGLEFRHKELEAPLIPQRTHSLLYQPQKKVKPEATDSYVSQLTAEADDHLQSPNRDSLY
TSMPNLRDSPYPESSPDMAEDLSPSRRSENEDIYYKSMPNLGAGRHLHMCYQISRGNSDGYIIPINKEGC
IPEGDVREGQMQLVTSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH