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Report for CCDS80039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80039.1 Public Mus musculus 3 Pdlim5 23 108 98 CCDS HistoryNCBI Gene:56376Re-query CCDS DB by CCDS ID:80039.1Re-query CCDS DB by GeneID:56376See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80039.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168967.8 ENSMUSP00000132647.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168967.8Link to Ensembl Protein Viewer:ENSMUSP00000132647.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000168967Re-query CCDS DB by Protein ID:ENSMUSP00000132647
Original member NCBI NM_001190857.1 NP_001177786.1 Updated not alive Link to Nucleotide Sequence:NM_001190857.1Link to Protein Sequence:NP_001177786.1Re-query CCDS DB by Nucleotide ID:NM_001190857Re-query CCDS DB by Protein ID:NP_001177786
Current member NCBI NM_001190857.2 NP_001177786.1 Accepted alive Link to Nucleotide Sequence:NM_001190857.2Link to Protein Sequence:NP_001177786.1Re-query CCDS DB by Nucleotide ID:NM_001190857Re-query CCDS DB by Protein ID:NP_001177786Link to BLAST:NP_001177786.1

Chromosomal Locations for CCDS 80039.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142303328 142303421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142303943 142303979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142304297 142304469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142304705 142304722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142312123 142312214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142314406 142314448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142352734 142352885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142391713 142391808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGAGCAACTACAGTGTGTCATTGGTCGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATT
TCAACATGCCTCTGACAATCTCTAGTCTGAAGGATGGTGGCAAGGCATCTCAGGCACATGTCAGAATAGG
GGACGTGGTTCTCAGCATCGATGGGATCAGTGCACAGGGAATGACGCATCTTGAAGCCCAGAACAAGATT
AAGGCTTGTACGGGCTCCTTGAATATGACTCTACAAAGAGCTTCAGCTGCAGCCAAGAGTGAGCCGGTTT
CCGTCCAGAAGCCCACAGTCACCAGCGTGTGTTCCGAGTCTGCTCAGGAGCTAGCAGAGGGACAGAGAAG
AGGATCCCAGGGTGACATTAAGCAGCAAAATGGGAAAATTCCACCTAAACGCCCACCAAGAAAACACATT
GTGGAGCGCAACACGGAGTTTTATCACATACCCACTCACAGTGATGCCAGCAAGAAACGGCTGATTGAGG
ACACTGAGGACTGGCGCCCCCGGACTGGAACGACTCAGTCTCGTTCTTTCCGGATCCTTGCCCAGATCAC
TGGGACTGAGCATCTGACAGAATCTGAAAATGACAATACGAAGAAGGCAAAGGAAAAGATACCCCTTCAC
GTCTTTAGTCCCAAATACACAAAATTACGTGACTGGCACCATGAAGTTTCAGCACGTGCTCTTAATGTAC
AGTGA

Translation (234 aa):
MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKI
KACTGSLNMTLQRASAAAKSEPVSVQKPTVTSVCSESAQELAEGQRRGSQGDIKQQNGKIPPKRPPRKHI
VERNTEFYHIPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHLTESENDNTKKAKEKIPLH
VFSPKYTKLRDWHHEVSARALNVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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