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Report for CCDS7988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7988.1 Public Homo sapiens 11 MS4A12 24 110 108 CCDS HistoryNCBI Gene:54860Re-query CCDS DB by CCDS ID:7988.1Re-query CCDS DB by GeneID:54860See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7988.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000016913.8 ENSP00000016913.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000016913.8Link to Ensembl Protein Viewer:ENSP00000016913.4Re-query CCDS DB by Nucleotide ID:ENST00000016913Re-query CCDS DB by Protein ID:ENSP00000016913
Original member Current member NCBI NM_017716.3 NP_060186.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017716.3Link to Protein Sequence:NP_060186.2Re-query CCDS DB by Nucleotide ID:NM_017716Re-query CCDS DB by Protein ID:NP_060186Link to BLAST:NP_060186.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060186.2 267 Q9NXJ0-1 267 100% 0 0

Chromosomal Locations for CCDS 7988.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60497319 60497594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60501045 60501182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60501983 60502039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60503701 60503817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60506728 60506838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60507020 60507124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGATGTCATCCAAGCCAACAAGCCATGCTGAAGTAAATGAAACCATACCCAACCCTTACCCACCAAGCA
GCTTTATGGCTCCTGGATTTCAACAGCCTCTGGGTTCAATCAACTTAGAAAACCAAGCTCAGGGTGCTCA
GCGTGCTCAGCCCTACGGCATCACATCTCCGGGAATCTTTGCTAGCAGTCAACCGGGTCAAGGAAATATA
CAAATGATAAATCCAAGTGTGGGAACAGCAGTAATGAACTTTAAAGAAGAAGCAAAGGCACTAGGGGTGA
TCCAGATCATGGTTGGATTGATGCACATTGGTTTTGGAATTGTTTTGTGTTTAATATCCTTCTCTTTTAG
AGAAGTATTAGGTTTTGCCTCTACTGCTGTTATTGGTGGATACCCATTCTGGGGTGGCCTTTCTTTTATT
ATCTCTGGCTCTCTCTCTGTGTCAGCATCCAAGGAGCTTTCCCGTTGTCTGGTGAAAGGCAGCCTGGGAA
TGAACATTGTTAGTTCTATCTTGGCCTTCATTGGAGTGATTCTGCTGCTGGTGGATATGTGCATCAATGG
GGTAGCTGGCCAAGACTACTGGGCCGTGCTTTCTGGAAAAGGCATTTCAGCCACGCTGATGATCTTCTCC
CTCTTGGAGTTCTTCGTAGCTTGTGCCACAGCCCATTTTGCCAACCAAGCAAACACCACAACCAATATGT
CTGTCCTGGTTATTCCAAATATGTATGAAAGCAACCCTGTGACACCAGCGTCTTCTTCAGCTCCTCCCAG
ATGCAACAACTACTCAGCTAATGCCCCTAAATAG

Translation (267 aa):
MMSSKPTSHAEVNETIPNPYPPSSFMAPGFQQPLGSINLENQAQGAQRAQPYGITSPGIFASSQPGQGNI
QMINPSVGTAVMNFKEEAKALGVIQIMVGLMHIGFGIVLCLISFSFREVLGFASTAVIGGYPFWGGLSFI
ISGSLSVSASKELSRCLVKGSLGMNIVSSILAFIGVILLLVDMCINGVAGQDYWAVLSGKGISATLMIFS
LLEFFVACATAHFANQANTTTNMSVLVIPNMYESNPVTPASSSAPPRCNNYSANAPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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