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Report for CCDS79845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79845.1 Public Mus musculus 2 Sirpa 23 108 98 CCDS HistoryNCBI Gene:19261Re-query CCDS DB by CCDS ID:79845.1Re-query CCDS DB by GeneID:19261See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163034.7 ENSMUSP00000124888.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163034.7Link to Ensembl Protein Viewer:ENSMUSP00000124888.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163034Re-query CCDS DB by Protein ID:ENSMUSP00000124888
Original member NCBI NM_001291022.1 NP_001277951.1 Updated not alive Link to Nucleotide Sequence:NM_001291022.1Link to Protein Sequence:NP_001277951.1Re-query CCDS DB by Nucleotide ID:NM_001291022Re-query CCDS DB by Protein ID:NP_001277951
Current member NCBI NM_001291022.2 NP_001277951.1 Accepted alive Link to Nucleotide Sequence:NM_001291022.2Link to Protein Sequence:NP_001277951.1Re-query CCDS DB by Nucleotide ID:NM_001291022Re-query CCDS DB by Protein ID:NP_001277951Link to BLAST:NP_001277951.1

Chromosomal Locations for CCDS 79845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 129593613 129593694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129618457 129618570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129621203 129621227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129627946 129627985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129629927 129630184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGAGCCCGCCGGCCCGGCCCCTGGCCGCCTAGGGCCGCTGCTGCTCTGCCTGCTGCTCTCCGCGTCCT
GTTTCTGTACAGATAATAATGCTACCCACAACTGGAATGTCTTCATCGGTGTGGGCGTGGCGTGTGCTTT
GCTCGTAGTCCTGCTGATGGCTGCTCTCTACCTCCTCCGGATCAAACAGAAGAAAGCCAAGGGGTCAACA
TCTTCCACACGGTTGCACGAGCCCGAGAAGAACGCCAGGGAAATAACCCAGATCCAGGACACAAATGACA
TCAACGACATCACATACGCAGACCTGAATCTGCCCAAAGAGAAGAAGCCCGCACCCCGGGCCCCTGAGCC
TAACAACCACACAGAATATGCAAGCATTGAGACAGGCAAAGTGCCTAGGCCAGAGGATACCCTCACCTAT
GCTGACCTGGACATGGTCCACCTCAGCCGGGCACAGCCAGCCCCCAAGCCTGAGCCATCTTTCTCAGAGT
ATGCTAGTGTCCAGGTCCAGAGGAAGTGA

Translation (172 aa):
MEPAGPAPGRLGPLLLCLLLSASCFCTDNNATHNWNVFIGVGVACALLVVLLMAALYLLRIKQKKAKGST
SSTRLHEPEKNAREITQIQDTNDINDITYADLNLPKEKKPAPRAPEPNNHTEYASIETGKVPRPEDTLTY
ADLDMVHLSRAQPAPKPEPSFSEYASVQVQRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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