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Report for CCDS7976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7976.1 Public Homo sapiens 11 MRPL16 24 110 108 CCDS HistoryNCBI Gene:54948Re-query CCDS DB by CCDS ID:7976.1Re-query CCDS DB by GeneID:54948See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7976.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300151.5 ENSP00000300151.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300151.5Link to Ensembl Protein Viewer:ENSP00000300151.4Re-query CCDS DB by Nucleotide ID:ENST00000300151Re-query CCDS DB by Protein ID:ENSP00000300151
Original member Current member NCBI NM_017840.4 NP_060310.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017840.4Link to Protein Sequence:NP_060310.1Re-query CCDS DB by Nucleotide ID:NM_017840Re-query CCDS DB by Protein ID:NP_060310Link to BLAST:NP_060310.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060310.1 251 Q9NX20 251 100% 0 0

Chromosomal Locations for CCDS 7976.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59806347 59806832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59807701 59807849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59809855 59809920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59810604 59810658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGTGGAGGCTGCTGGCTCGCGCTAGTGCGCCGCTCCTGCGGGTGCCCTTGTCAGATTCCTGGGCACTCC
TCCCCGCCAGTGCTGGCGTAAAGACACTGCTCCCAGTACCAAGTTTTGAAGATGTTTCCATTCCTGAAAA
ACCCAAGCTTAGATTTATTGAAAGGGCACCACTTGTGCCAAAAGTAAGAAGAGAACCTAAAAATTTAAGT
GACATACGGGGACCTTCCACTGAAGCTACGGAGTTTACAGAAGGCAATTTTGCAATCTTGGCATTGGGTG
GTGGCTACCTGCATTGGGGCCACTTTGAAATGATGCGCCTGACAATCAACCGCTCTATGGACCCCAAGAA
CATGTTTGCCATATGGCGAGTACCAGCCCCTTTCAAGCCCATCACTCGCAAAAGTGTTGGGCATCGCATG
GGGGGAGGCAAAGGTGCTATTGACCACTACGTGACACCTGTGAAGGCTGGCCGCCTTGTTGTAGAGATGG
GTGGGCGTTGTGAATTTGAAGAAGTGCAAGGTTTCCTTGACCAGGTTGCCCACAAGTTGCCCTTCGCAGC
AAAGGCTGTGAGCCGCGGGACTCTAGAGAAGATGCGAAAAGATCAAGAGGAAAGAGAACGTAACAACCAG
AACCCCTGGACATTTGAGCGAATAGCCACTGCCAACATGCTGGGCATACGGAAAGTACTGAGCCCATATG
ACTTGACCCACAAGGGGAAATACTGGGGCAAGTTCTACATGCCCAAACGTGTGTAG

Translation (251 aa):
MWRLLARASAPLLRVPLSDSWALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPKNLS
DIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRM
GGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKMRKDQEERERNNQ
NPWTFERIATANMLGIRKVLSPYDLTHKGKYWGKFYMPKRV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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