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Report for CCDS7972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7972.1 Public Homo sapiens 11 FAM111B 24 110 108 CCDS HistoryNCBI Gene:374393Re-query CCDS DB by CCDS ID:7972.1Re-query CCDS DB by GeneID:374393See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7972.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343597.4 ENSP00000341565.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343597.4Link to Ensembl Protein Viewer:ENSP00000341565.3Re-query CCDS DB by Nucleotide ID:ENST00000343597Re-query CCDS DB by Protein ID:ENSP00000341565
Original member Current member EBI ENST00000620384.1 ENSP00000483456.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620384.1Link to Ensembl Protein Viewer:ENSP00000483456.1Re-query CCDS DB by Nucleotide ID:ENST00000620384Re-query CCDS DB by Protein ID:ENSP00000483456
Original member Current member NCBI NM_198947.4 NP_945185.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198947.4Link to Protein Sequence:NP_945185.1Re-query CCDS DB by Nucleotide ID:NM_198947Re-query CCDS DB by Protein ID:NP_945185Link to BLAST:NP_945185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945185.1 734 Q6SJ93-1 734 100% 0 0

Chromosomal Locations for CCDS 7972.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59109626 59109706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59124179 59126302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2205 nt):
ATGAATTCCATGAAGACTGAAGAAAACAAGTCATTTAGCGCTATGGAAGATGACCAGAGGACTAGACCTG
AAGTTTCAAAGGATACTGTCATGAAGCAGACACATGCTGACACACCTGTTGATCATTGTCTATCTGGCAT
AAGAAAGTGTAGCAGCACCTTTAAGCTTAAAAGTGAAGTCAACAAGCATGAAACAGCCCTTGAAATGCAG
AATCCAAATTTGAACAATAAAGAATGTTGTTTCACCTTTACGTTGAATGGAAACTCCAGAAAATTAGACC
GTAGTGTGTTTACAGCATATGGTAAACCCAGCGAGAGTATCTACTCAGCCCTGAGTGCTAATGACTATTT
CAGTGAAAGGATAAAGAATCAGTTTAATAAGAACATTATTGTTTATGAAGAAAAGACAATAGATGGACAT
ATAAATTTAGGAATGCCTCTCAAGTGCCTGCCTAGTGATTCTCATTTTAAAATTACATTTGGTCAAAGAA
AGAGTAGCAAAGAAGATGGACACATATTACGCCAATGTGAAAATCCAAACATGGAATGCATTCTTTTTCA
TGTTGTTGCTATAGGAAGGACAAGAAAGAAGATTGTTAAGATCAACGAACTTCATGAAAAAGGAAGTAAA
CTTTGTATTTATGCCTTGAAGGGTGAGACTATTGAAGGAGCCTTATGCAAGGATGGCCGTTTTCGGTCTG
ACATAGGTGAATTTGAATGGAAACTAAAGGAAGGTCATAAGAAAATTTATGGAAAACAGTCCATGGTGGA
TGAAGTATCTGGAAAAGTCTTAGAAATGGACATTTCAAAAAAAAAAGCATTACAACAGAAAGATATCCAT
AAAAAAATTAAACAGAATGAAAGTGCCACTGATGAAATTAATCACCAGAGTCTGATACAGTCTAAGAAAA
AAGTCCACAAACCAAAGAAAGATGGAGAGACCAAAGATGTAGAACACAGCAGAGAGCAAATTCTCCCACC
TCAGGATCTAAGCCATTATATTAAAGATAAAACTCGCCAGACAATTCCCAGGATTAGAAATTATTACTTT
TGTAGTTTGCCCCGAAAATATAGGCAAATAAACTCACAAGTTAGACGGAGGCCGCATCTGGGTAGGCGGT
ATGCTATTAATCTGGATGTCCAAAAGGAGGCAATTAATCTCTTAAAGAATTATCAAACGTTGAATGAAGC
CATAATGCATCAGTATCCGAATTTTAAAGAGGAGGCACAGTGGGTAAGAAAATATTTTCGGGAAGAACAA
AAGAGAATGAATCTTTCACCAGCTAAGCAATTCAACATATATAAAAAGGACTTCGGAAAAATGACTGCAA
ATTCTGTTTCAGTTGCAACCTGCGAACAGCTTACATATTATAGCAAGTCAGTTGGGTTCATGCAATGGGA
CAATAATGGAAACACAGGTAATGCTACTTGCTTTGTCTTCAATGGTGGTTATATTTTCACCTGTCGACAT
GTTGTACATCTTATGGTGGGTAAAAACACACATCCAAGTTTGTGGCCAGATATAATTAGCAAATGTGCGA
AGGTAACCTTCACTTATACAGAGTTCTGCCCTACTCCTGACAATTGGTTTTCCATTGAGCCATGGCTTAA
AGTGTCCAATGAAAATCTAGATTATGCCATTTTAAAACTAAAAGAAAATGGAAATGCGTTTCCTCCAGGA
CTATGGCGACAGATTTCTCCTCAACCATCTACTGGTTTGATTTATTTAATTGGTCATCCTGAAGGCCAGA
TCAAGAAAATAGATGGTTGTACTGTGATTCCTCTAAACGAACGATTGAAAAAATATCCAAACGATTGTCA
AGATGGGTTGGTAGATCTCTATGATACCACCAGTAATGTATACTGTATGTTTACCCAAAGAAGTTTCCTA
TCAGAGGTTTGGAACACACACACGCTTAGTTATGATACTTGTTTCTCTGATGGGTCCTCAGGCTCCCCAG
TGTTTAATGCATCTGGCAAATTGGTTGCTTTGCATACCTTTGGGCTTTTTTATCAACGAGGATTTAATGT
GCATGCCCTTATTGAATTTGGTTATTCTATGGATTCTATTCTTTGTGATATTAAAAAGACAAATGAGAGC
TTGTATAAATCATTAAATGATGAGAAACTTGAGACCTACGATGAAGAGAAAGGTAAACAAGAGTCATCAC
TTCAAGATCATCAGATTGAACCCATGGAATGTTAG

Translation (734 aa):
MNSMKTEENKSFSAMEDDQRTRPEVSKDTVMKQTHADTPVDHCLSGIRKCSSTFKLKSEVNKHETALEMQ
NPNLNNKECCFTFTLNGNSRKLDRSVFTAYGKPSESIYSALSANDYFSERIKNQFNKNIIVYEEKTIDGH
INLGMPLKCLPSDSHFKITFGQRKSSKEDGHILRQCENPNMECILFHVVAIGRTRKKIVKINELHEKGSK
LCIYALKGETIEGALCKDGRFRSDIGEFEWKLKEGHKKIYGKQSMVDEVSGKVLEMDISKKKALQQKDIH
KKIKQNESATDEINHQSLIQSKKKVHKPKKDGETKDVEHSREQILPPQDLSHYIKDKTRQTIPRIRNYYF
CSLPRKYRQINSQVRRRPHLGRRYAINLDVQKEAINLLKNYQTLNEAIMHQYPNFKEEAQWVRKYFREEQ
KRMNLSPAKQFNIYKKDFGKMTANSVSVATCEQLTYYSKSVGFMQWDNNGNTGNATCFVFNGGYIFTCRH
VVHLMVGKNTHPSLWPDIISKCAKVTFTYTEFCPTPDNWFSIEPWLKVSNENLDYAILKLKENGNAFPPG
LWRQISPQPSTGLIYLIGHPEGQIKKIDGCTVIPLNERLKKYPNDCQDGLVDLYDTTSNVYCMFTQRSFL
SEVWNTHTLSYDTCFSDGSSGSPVFNASGKLVALHTFGLFYQRGFNVHALIEFGYSMDSILCDIKKTNES
LYKSLNDEKLETYDEEKGKQESSLQDHQIEPMEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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