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Report for CCDS79352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79352.1 Public Mus musculus 14 Pcdh9 23 108 98 CCDS HistoryNCBI Gene:211712Re-query CCDS DB by CCDS ID:79352.1Re-query CCDS DB by GeneID:211712See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192221.5 ENSMUSP00000142260.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192221.5Link to Ensembl Protein Viewer:ENSMUSP00000142260.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192221Re-query CCDS DB by Protein ID:ENSMUSP00000142260
Original member Current member NCBI NM_001271799.1 NP_001258728.1 Accepted alive Link to Nucleotide Sequence:NM_001271799.1Link to Protein Sequence:NP_001258728.1Re-query CCDS DB by Nucleotide ID:NM_001271799Re-query CCDS DB by Protein ID:NP_001258728Link to BLAST:NP_001258728.1

Chromosomal Locations for CCDS 79352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 93015512 93015885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 93326679 93326754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 93885697 93888361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 93890121 93890122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3117 nt):
ATGCTGATCAAAATCAAGATCATTGTCAAGGATACCAATGATAATGCCCCCATGTTTCCGTCTCCTGTCA
TCAATATTTCCATCCCAGAGAACACTTTGATCAACAGCCGCTTTCCAATCCCATCAGCCACAGACCCTGA
CACGGGCTTCAATGGGGTACAGCATTATGAATTACTAAATGGACAGAGTGTTTTTGGACTGGATATCGTG
GAAACTCCGGAGGGAGAAAAGTGGCCGCAATTGATTGTTCAGCAGAACTTGGATAGAGAACAAAAAGATA
CCTATGTGATGAAAATCAAAGTGGAGGATGGGGGCACGCCACAGAAATCGAGCACAGCTATTCTCCAGGT
CACAGTAAGTGATGTCAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGTAGAAGTGCATATTCCAGAG
AATGCTCCTGTGGGGACCTCTGTCATTCAGCTCCATGCCACTGATGCAGACATAGGCAGTAATGCTGAAA
TCCGGTATATTTTTGGTGCCCAGGTCGCCCCTGCAACCAAAAGACTCTTTGCTTTAAATAATACAACTGG
GCTGATAACAGTTCAGAGGTCTTTAGATAGGGAAGAGACAGCCATTCACAAAGTGACAGTGCTGGCTAGT
GACGGCAGCTCCACTCCTGCCAGAGCCACCGTGACCATCAATGTCACCGATGTAAATGATAACCCTCCAA
ACATAGACCTCAGGTACATTATAAGTCCCATCAATGGCACAGTGTATCTCTCTGAGAAAGACCCTGTCAA
TACAAAGATTGCCCTCATTACAGTTTCAGATAAGGACACAGATGTGAATGGCAAAGTGATCTGTTTTATT
GAAAGAGAGGTCCCATTTCATTTGAAGGCAGTGTATGACAACCAGTATCTGCTAGAGACCTCTTCTCTGC
TGGACTATGAGGGCACCAAAGAATTCAGCTTTAAAATCGTTGCCTCTGATTCGGGGAAGCCCAGTTTGAA
TCAGACTGCCCTGGTAAGGGTTAAGCTCGAGGATGAAAATGACAACCCACCAATTTTCAACCAGCCTGTA
ATTGAGCTGTCAGTTTCTGAAAACAACCGACGTGGGTTATACTTAACAACTATTAGTGCTACAGATGAAG
ACAGTGGAAAAAATGCAGACATTGTTTATCAGCTTGGACCGAATGCCTCCTTCTTTGATCTGGACAGAAA
GACAGGAGTTTTGACAGCCTCCAGAGTCTTTAACAGGGAGGAACAAGAGCGGTTCATTTTTACAGTAACT
GCCAGGGACAATGGGACCCCTCCCCTCCAGAGCCAAGCAGCAGTGATAGTTACTGTTCTGGATGAGAATG
ACAATAGCCCCAAGTTTACTCATAATCACTTTCAGTTTTTTGTGTCTGAGAATCTGCCAAAGTATAGTAC
TGTGGGGGTAATCACAGTGACAGACGAAGACGCTGGAGAGAATAAAGCTGTGACTCTTTCCATTCTAAAT
GACAATGAAAATTTTGTGTTGGATCCCTATTCAGGAGTCATAAAGTCCAATGTCTCCTTTGATAGAGAGC
AGCAGAGTTCCTACACGTTTGACGTCAAAGCCACCGACGGGGGACAGCCACCACGGTCCTCTACTGCAAA
AGTAACTATCAATGTCATGGATGTCAATGACAATAGTCCAGTTGTCATTTCTCCACCATCCAACACCTCC
TTTAAGTTGGTGCCCCTCTCAGCCATTCCTGGTTCTGTGGTTGCTGAAGTGTTTGCGGTGGATATTGACA
CCGGAATGAATGCAGAACTCAAGTATACCATAGTGAGCGGGAACAACAAGGGATTATTTCGGATTGATCC
AGTAACAGGCAATATCACCTTAGAAGAGAAGCCAGCACCTACTGATGTGGGCCTGCACCGTCTTGTGGTC
AACATAAGTGACCTGGGGTACCCTAAGGCTTTGCACACTCTCGTGCTGGTATTTCTTTATGTGAACGACA
CTGCTGGAAACACCTCATATATATATGACTTGATCCGTAGGACTATGGAGACCCCACTGGACCGGAACAT
AGGAGATAGTGGTCAACCTTATCAGAACGAGGACTATCTCACCATCATGATTGCCATCGTTGCTGGGGCC
ATGGTGGTCATTGTTGTGATCTTTGTCACGGTGCTGGTGCGCTGTCGCCATGCGTCCAGGTTCAAGGCCG
CTCAGAGGAGCAAACAAGGGGCTGAATGGATGTCCCCAAACCAGGAGAATAAACAAAATAAGAAAAAGAA
ACGGAAGAAAAGAAAGTCGCCCAAGAGTTCTCTTTTGAACTTTGTTACTATTGAAGAGTCCAAACCCGAT
GATGCCGTTCATGAACCCATCAATGGGACCATAAGCCTGCCTGCCGAGCTGGAGGAACAGGGTATAGGAA
GATTTGACTGGGGCCCAGCCCCTCCAACCACCTTCAAGCCTAACAGCCCTGACCTGGCCAAGCACTACAA
GTCGGCCTCTCCTCAGCCCGCTTTTCATCTCAAACCTGACACTCCAGTTTCTGTGAAAAAGCACCACGTC
ATTCAAGAGCTCCCGTTGGACAACACCTTTGTTGGGGGCTGCGACACCCTTTCCAAACGCTCCTCCACTA
GTTCAGATCACTTCAGTGCCTCAGAGTGCAGCTCCCAAGGAGGCTTCAAGACAAAGGGCCCCTTACACAC
CAGACAGCCACAGGACGAATTCTACGACCAGGCCTCTCCGGACAAGAGGACCGAAGCAGATGGCAACTCG
GATCCCAATTCTGATGGACCTCTGGGTCCCCGAGGTTTAGCTGAAGCTACAGAGATGTGCACTCAAGAGT
GTCTGGTTTTGGGTCACTCTGATAATTGCTGGATGCCTCCTGGCTTGGGTCCATACCAACACCCTAAATC
TCCTCTGTCAACCTTTGCACCCCAGAAAGAATGGATCAAGAAAGACAAGCTTGTGAATGGGCACACCCTG
ACAAGAGCGTGGAAAGAAGACACCAACAGGAACCAATTCAATGACCGTAAGCAGTATGGCTCCAATGAAG
GCCATTTCAACAATGGCGGCCACATGGCGGACATTCCTCTGGCAAATCTGAAGTCCTATAAGCAAGCAGG
AGGCACGATTGAGAGTCCTAAGGAGCACCAACTTTAA

Translation (1038 aa):
MLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDIV
ETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPE
NAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLAS
DGSSTPARATVTINVTDVNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFI
EREVPFHLKAVYDNQYLLETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPV
IELSVSENNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFNREEQERFIFTVT
ARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDEDAGENKAVTLSILN
DNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTS
FKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVV
NISDLGYPKALHTLVLVFLYVNDTAGNTSYIYDLIRRTMETPLDRNIGDSGQPYQNEDYLTIMIAIVAGA
MVVIVVIFVTVLVRCRHASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPD
DAVHEPINGTISLPAELEEQGIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKKHHV
IQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQPQDEFYDQASPDKRTEADGNS
DPNSDGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWIKKDKLVNGHTL
TRAWKEDTNRNQFNDRKQYGSNEGHFNNGGHMADIPLANLKSYKQAGGTIESPKEHQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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