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Report for CCDS7923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7923.1 Public Homo sapiens 11 ZNF408 24 110 108 CCDS HistoryNCBI Gene:79797Re-query CCDS DB by CCDS ID:7923.1Re-query CCDS DB by GeneID:79797See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7923.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311764.3 ENSP00000309606.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311764.3Link to Ensembl Protein Viewer:ENSP00000309606.2Re-query CCDS DB by Nucleotide ID:ENST00000311764Re-query CCDS DB by Protein ID:ENSP00000309606
Original member Current member NCBI NM_024741.3 NP_079017.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024741.3Link to Protein Sequence:NP_079017.1Re-query CCDS DB by Nucleotide ID:NM_024741Re-query CCDS DB by Protein ID:NP_079017Link to BLAST:NP_079017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079017.1 720 Q9H9D4 720 100% 0 0

Chromosomal Locations for CCDS 7923.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46701048 46701099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46701399 46701676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46702704 46702765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46702984 46703243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46704353 46705863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGGAGGAGGCGGAGGAGCTGCTCTTGGAGGGGAAGAAGGCGCTGCAACTCGCCCGCGAGCCGCGCCTGG
GC
CTGGACTTAGGATGGAACCCTTCCGGAGAAGGCTGTACGCAGGGCCTCAAAGACGTCCCACCCGAGCC
G
ACCCGAGACATCCTCGCTTTAAAGAGCCTTCCCCGGGGCTTGGCCCTTGGCCCCTCACTCGCCAAGGAA
CAG
CGCTTGGGGGTCTGGTGTGTCGGGGACCCCCTGCAGCCCGGCCTGCTGTGGGGGCCGCTGGAAGAGG
AG
TCTGCCTCCAAGGAGAAGGGCGAGGGAGTAAAGCCACGGCAGGAGGAGAACCTGTCATTAGGCCCATG
G
GGAGACGTGTGTGCCTGTGAGCAGAGTTCTGGCTGGACTAGCTTGGTACAACGGGGCAGGCTGGAGAGT
GAG
GGAAATGTGGCCCCAGTGCGGATCAGCGAGAGGCTTCATCTGCAAGTGTACCAGCTGGTGCTGCCAG
GC
TCTGAACTGCTGCTGTGGCCCCAGCCTTCCTCTGAGGGCCCAAGTCTCACCCAGCCTGGGCTGGACAA
A
GAGGCAGCTGTAGCAGTGGTGACAGAAGTGGAGTCTGCTGTACAGCAGGAAGTGGCCTCCCCTGGGGAG
GAT
GCAGCAGAACCTTGCATAGATCCTGGTTCCCAGTCACCCTCTGGCATCCAGGCAGAGAATATGGTGA
GC
CCTGGACTTAAGTTCCCAACCCAGGACCGAATTTCCAAGGATAGCCAGCCACTTGGCCCATTGCTTCA
G
GATGGCGACGTGGATGAGGAATGCCCGGCCCAGGCACAGATGCCACCTGAACTTCAGAGCAATTCGGCT
ACC
CAGCAGGACCCAGATGGCAGTGGAGCCAGTTTCTCATCTTCTGCCAGGGGCACCCAGCCGCATGGCT
AC
CTGGCCAAGAAGTTACACAGCCCCAGTGATCAGTGCCCACCCAGAGCAAAGACCCCAGAGCCTGGAGC
C
CAGCAGTCTGGCTTCCCTACACTCTCGCGGAGCCCTCCTGGCCCAGCAGGAAGCTCCCCAAAGCAGGGG
CGA
CGGTACCGGTGTGGAGAGTGTGGCAAGGCATTCCTACAGCTGTGCCACCTAAAGAAGCACGCATTTG
TG
CACACGGGCCACAAGCCCTTTCTTTGCACTGAGTGTGGCAAGAGCTATAGCTCAGAGGAGAGCTTCAA
A
GCCCATATGCTGGGCCACCGTGGGGTGCGGCCCTTCCCCTGTCCACAATGCGACAAGGCCTATGGCACC
CAG
CGAGACCTCAAAGAGCACCAGGTGGTACATTCAGGTGCCCGGCCCTTTGCTTGTGACCAGTGTGGCA
AG
GCCTTTGCCCGCCGGCCCTCCCTGCGGCTGCATCGCAAGACCCACCAGGTGCCAGCTGCCCCTGCCCC
T
TGCCCATGCCCTGTGTGTGGGCGGCCCCTGGCCAACCAGGGCTCCCTGCGGAACCATATGAGGCTCCAT
ACA
GGAGAAAAGCCTTTCCTGTGCCCGCACTGTGGCCGGGCGTTTCGTCAGCGGGGCAACCTGCGTGGGC
AT
TTGCGGCTCCACACCGGGGAGCGTCCTTACCGCTGCCCACACTGTGCCGATGCCTTCCCCCAGCTGCC
T
GAACTGCGGCGCCATCTCATCTCACACACCGGGGAGGCCCACTTGTGCCCGGTGTGTGGCAAGGCCCTC
CGA
GACCCACACACGCTCCGAGCTCACGAGCGCCTGCACTCCGGAGAGAGGCCCTTTCCCTGTCCCCAGT
GT
GGCCGTGCTTACACGCTGGCCACCAAGCTGCGGCGCCACCTCAAATCTCACTTGGAGGACAAGCCCTA
C
CGCTGCCCCACCTGTGGCATGGGCTACACCCTCCCGCAGAGCCTCAGGCGGCATCAGCTCAGTCACCGG
CCT
GAGGCACCCTGCAGCCCACCCTCTGTGCCTTCTGCTGCTTCTGAGCCCACTGTGGTGCTCCTGCAGG
CT
GAGCCACAACTGCTGGACACACACAGAGAGGAGGAAGTCTCCCCCGCCAGGGATGTTGTTGAGGTCAC
C
ATTTCAGAAAGCCAGGAGAAGTGCTTTGTGGTGCCAGAGGAGCCAGATGCCGCCCCCAGCCTGGTGCTA
ATC
CATAAGGACATGGGCCTCGGCGCCTGGGCAGAGGTGGTGGAGGTGGAGATGGGCACCTGA


Translation (720 aa):
MEEAEELLLEGKKALQLAREPRLGLDLGWNPSGEGCTQGLKDVPPEPTRDILALKSLPRGLALGPSLAKE
Q
RLGVWCVGDPLQPGLLWGPLEEESASKEKGEGVKPRQEE
NLSLGPWGDVCACEQSSGWTSLVQRGRLES
E
GNVAPVRISERLHLQVYQLVLPGSELLLWPQPSSEGPSLTQPGLDKEAAVAVVTEVESAVQQEVASPGE
D
AAEPCI
DPGSQSPSGIQAENMVSPGLKFPTQDRISKDSQPLGPLLQDGDVDEECPAQAQMPPELQSNSA
T
QQDPDGSGASFSSSARGTQPHGYLAKKLHSPSDQCPPRAKTPEPGAQQSGFPTLSRSPPGPAGSSPKQG
R
RYRCGECGKAFLQLCHLKKHAFVHTGHKPFLCTECGKSYSSEESFKAHMLGHRGVRPFPCPQCDKAYGT
Q
RDLKEHQVVHSGARPFACDQCGKAFARRPSLRLHRKTHQVPAAPAPCPCPVCGRPLANQGSLRNHMRLH
T
GEKPFLCPHCGRAFRQRGNLRGHLRLHTGERPYRCPHCADAFPQLPELRRHLISHTGEAHLCPVCGKAL
R
DPHTLRAHERLHSGERPFPCPQCGRAYTLATKLRRHLKSHLEDKPYRCPTCGMGYTLPQSLRRHQLSHR
P
EAPCSPPSVPSAASEPTVVLLQAEPQLLDTHREEEVSPARDVVEVTISESQEKCFVVPEEPDAAPSLVL
I
HKDMGLGAWAEVVEVEMGT




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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