NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79145.1 Public Mus musculus 12 Spata7 23 108 98 CCDS HistoryNCBI Gene:104871Re-query CCDS DB by CCDS ID:79145.1Re-query CCDS DB by GeneID:104871See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79145.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101144.9 ENSMUSP00000098704.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101144.9Link to Ensembl Protein Viewer:ENSMUSP00000098704.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101144Re-query CCDS DB by Protein ID:ENSMUSP00000098704
Original member Current member NCBI NM_001289573.1 NP_001276502.1 Accepted alive Link to Nucleotide Sequence:NM_001289573.1Link to Protein Sequence:NP_001276502.1Re-query CCDS DB by Nucleotide ID:NM_001289573Re-query CCDS DB by Protein ID:NP_001276502Link to BLAST:NP_001276502.1

Chromosomal Locations for CCDS 79145.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 98628316 98628334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98631963 98632037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98634224 98634319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98637566 98637613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98648349 98648482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98661972 98662087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98663165 98663218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98664228 98664305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98668832 98668889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98669102 98669671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGATGGCAGCCGGAGAGTCAGAGCAACCTCTGTCCTCCCCAGATACAGCCCTCCATGCTTGTTTACAG
GACACCTGAGCACCAAGAGCAACGCTTTTTGCACTGATTCCTCTTCTCTCAGACTAAGCACCCTGCAGCT
GGTCAAGAACCACATGGCTATTCACTATAATAAAATCCTTTCAGCCAAAGCCGCAGTGGACTGCTCAATT
CCAGTAAGTGTGAATACTAGCATCAAATATGCTGACCAACAACGAAGAGAAAAACTGAGGAAGGAGTTGG
CACGGTGTGAAAAGGAGTTTAAATTAAGTAAATCTGCTATGCAGACCAATTCTAAGATGAATTCCAAGTT
CTTTGTAAATTCTCTACAGAAGGTACCTAATTACACGAGAAATGGTGCTGAAGACAAAATAGCTCCTTTA
CCCTCACAAGGACAAAACTTAGCATGGGACAGTATTCAAGATGGGATTCTGCAGCAGTCCTCAGAAAGGG
CATCCTGTAAGCTCTCCACAGAGTTTTCTCCAGACAGTAAAATCTACTCTGATGAAGAAGAGCTGCTGTA
CCTGAGTTTCATGGAAAATGTGACGGATGAAATCTTGAAACTTGGTTTATTTTCTAACAGGTTTCTAGAG
CGACTGTTTGAGCGACATATAAAGAAAAATAAACATCATTTGGAGGAGGGAAAGATGCGCTACCTGCTGC
ATGGGCTGAAGGTTGACTTAGGCTGCATATCTGAGGAAGACCCAGCAAAGCAAAAACATTTCAGAATGTT
GAATCAACTTCATTTTCAAAAGGCTCTGATTTCAAGAGAAAATGAGTTTGTAAGTGATGAAGAAACAGTG
AGTCACCACGAGCGCCAGCAGTACCAGGAGGCCCTGGACATGCTGTCGGCTGTGCCGAAGGACGAAAACA
AGATGTTCTCTTTACCGGGCGAATTTTTAATACCCGCCCATAAAGTCAAGCATTCAGAGGGTGTTATAAT
TCAACAGGTCAATGACGAAACAGATAATGAAGCCTCACCCTGGAATGAAAACAATCCAAGTGTTTCTGAT
AGTGTAATAGACCAGGAAACCTCTGTGGATGTCATTGAAGGTGACAGTGACTTTGAAAGGGCTGAGACTT
CCAGGGAACTCTGTTGTCTGAGCACATCACTGTCCCCATCTGGTCCATTCCCCAGCATCAATGGTGGCAG
TAATCATGGTAAGGAATTATCGACTCTACGAATCATGGGAATGAGCATTGAAGACTGA

Translation (415 aa):
MDGSRRVRATSVLPRYSPPCLFTGHLSTKSNAFCTDSSSLRLSTLQLVKNHMAIHYNKILSAKAAVDCSI
PVSVNTSIKYADQQRREKLRKELARCEKEFKLSKSAMQTNSKMNSKFFVNSLQKVPNYTRNGAEDKIAPL
PSQGQNLAWDSIQDGILQQSSERASCKLSTEFSPDSKIYSDEEELLYLSFMENVTDEILKLGLFSNRFLE
RLFERHIKKNKHHLEEGKMRYLLHGLKVDLGCISEEDPAKQKHFRMLNQLHFQKALISRENEFVSDEETV
SHHERQQYQEALDMLSAVPKDENKMFSLPGEFLIPAHKVKHSEGVIIQQVNDETDNEASPWNENNPSVSD
SVIDQETSVDVIEGDSDFERAETSRELCCLSTSLSPSGPFPSINGGSNHGKELSTLRIMGMSIED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH