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Report for CCDS7894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7894.1 Public Homo sapiens 11 EHF 24 110 108 CCDS HistoryNCBI Gene:26298Re-query CCDS DB by CCDS ID:7894.1Re-query CCDS DB by GeneID:26298See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7894.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257831.8 ENSP00000257831.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257831.8Link to Ensembl Protein Viewer:ENSP00000257831.3Re-query CCDS DB by Nucleotide ID:ENST00000257831Re-query CCDS DB by Protein ID:ENSP00000257831
Original member Current member EBI ENST00000530286.5 ENSP00000433508.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530286.5Link to Ensembl Protein Viewer:ENSP00000433508.1Re-query CCDS DB by Nucleotide ID:ENST00000530286Re-query CCDS DB by Protein ID:ENSP00000433508
Original member Current member EBI ENST00000533754.5 ENSP00000435837.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533754.5Link to Ensembl Protein Viewer:ENSP00000435837.1Re-query CCDS DB by Nucleotide ID:ENST00000533754Re-query CCDS DB by Protein ID:ENSP00000435837
Original member Current member NCBI NM_001378041.1 NP_001364970.1 Accepted alive Link to Nucleotide Sequence:NM_001378041.1Link to Protein Sequence:NP_001364970.1Re-query CCDS DB by Nucleotide ID:NM_001378041Re-query CCDS DB by Protein ID:NP_001364970Link to BLAST:NP_001364970.1
Original member Current member NCBI NM_001378042.1 NP_001364971.1 Accepted alive Link to Nucleotide Sequence:NM_001378042.1Link to Protein Sequence:NP_001364971.1Re-query CCDS DB by Nucleotide ID:NM_001378042Re-query CCDS DB by Protein ID:NP_001364971Link to BLAST:NP_001364971.1
Original member Current member NCBI NM_001378043.1 NP_001364972.1 Accepted alive Link to Nucleotide Sequence:NM_001378043.1Link to Protein Sequence:NP_001364972.1Re-query CCDS DB by Nucleotide ID:NM_001378043Re-query CCDS DB by Protein ID:NP_001364972Link to BLAST:NP_001364972.1
Original member Current member NCBI NM_001378044.1 NP_001364973.1 Accepted alive Link to Nucleotide Sequence:NM_001378044.1Link to Protein Sequence:NP_001364973.1Re-query CCDS DB by Nucleotide ID:NM_001378044Re-query CCDS DB by Protein ID:NP_001364973Link to BLAST:NP_001364973.1
Original member Current member NCBI NM_001378045.1 NP_001364974.1 Accepted alive Link to Nucleotide Sequence:NM_001378045.1Link to Protein Sequence:NP_001364974.1Re-query CCDS DB by Nucleotide ID:NM_001378045Re-query CCDS DB by Protein ID:NP_001364974Link to BLAST:NP_001364974.1
Original member Current member NCBI NM_001378046.1 NP_001364975.1 Accepted alive Link to Nucleotide Sequence:NM_001378046.1Link to Protein Sequence:NP_001364975.1Re-query CCDS DB by Nucleotide ID:NM_001378046Re-query CCDS DB by Protein ID:NP_001364975Link to BLAST:NP_001364975.1
Original member Current member NCBI NM_001378047.1 NP_001364976.1 Accepted alive Link to Nucleotide Sequence:NM_001378047.1Link to Protein Sequence:NP_001364976.1Re-query CCDS DB by Nucleotide ID:NM_001378047Re-query CCDS DB by Protein ID:NP_001364976Link to BLAST:NP_001364976.1
Original member Current member NCBI NM_012153.6 NP_036285.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012153.6Link to Protein Sequence:NP_036285.2Re-query CCDS DB by Nucleotide ID:NM_012153Re-query CCDS DB by Protein ID:NP_036285Link to BLAST:NP_036285.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001364970.1 300 Q9NZC4-1 300 100% 0 0
NP_001364971.1 300 Q9NZC4-1 300 100% 0 0
NP_001364972.1 300 Q9NZC4-1 300 100% 0 0
NP_001364973.1 300 Q9NZC4-1 300 100% 0 0
NP_001364974.1 300 Q9NZC4-1 300 100% 0 0
NP_001364975.1 300 Q9NZC4-1 300 100% 0 0
NP_001364976.1 300 Q9NZC4-1 300 100% 0 0
NP_036285.2 300 Q9NZC4-1 300 100% 0 0

Chromosomal Locations for CCDS 7894.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 34642631 34642727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34646439 34646684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34649019 34649081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34651542 34651610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34651737 34651805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34656908 34656970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34658533 34658728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34658832 34658931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGATTCTGGAAGGAGGTGGTGTAATGAATCTCAACCCCGGCAACAACCTCCTTCACCAGCCGCCAGCCT
GGACAGACAGCTACTCCACGTGCAATGTTTCCAGTGGGTTTTTTGGAGGCCAGTGGCATGAAATTCATCC
TCAGTACTGGACCAAGTACCAGGTGTGGGAGTGGCTCCAGCACCTCCTGGACACCAACCAGCTGGATGCC
AATTGTATCCCTTTCCAAGAGTTCGACATCAACGGCGAGCACCTCTGCAGCATGAGTTTGCAGGAGTTCA
CCCGGGCGGCAGGGACGGCGGGGCAGCTCCTCTACAGCAACTTGCAGCATCTGAAGTGGAACGGCCAGTG
CAGTAGTGACCTGTTCCAGTCCACACACAATGTCATTGTCAAGACTGAACAAACTGAGCCTTCCATCATG
AACACCTGGAAAGACGAGAACTATTTATATGACACCAACTATGGTAGCACAGTAGATTTGTTGGACAGCA
AAACTTTCTGCCGGGCTCAGATCTCCATGACAACCACCAGTCACCTTCCTGTTGCAGAGTCACCTGATAT
GAAAAAGGAGCAAGACCCCCCTGCCAAGTGCCACACCAAAAAGCACAACCCGAGAGGGACTCACTTATGG
GAATTCATCCGCGACATCCTCTTGAACCCAGACAAGAACCCAGGATTAATAAAATGGGAAGACCGATCTG
AGGGCGTCTTCAGGTTCTTGAAATCAGAGGCAGTGGCTCAGCTATGGGGTAAAAAGAAGAACAACAGCAG
CATGACCTATGAAAAGCTCAGCCGAGCTATGAGATATTACTACAAAAGAGAAATTCTGGAGCGTGTGGAT
GGACGAAGACTGGTATATAAATTTGGGAAGAATGCCCGAGGATGGAGAGAAAATGAAAACTGA

Translation (300 aa):
MILEGGGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQHLLDTNQLDA
NCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTEPSIM
NTWKDENYLYDTNYGSTVDLLDSKTFCRAQISMTTTSHLPVAESPDMKKEQDPPAKCHTKKHNPRGTHLW
EFIRDILLNPDKNPGLIKWEDRSEGVFRFLKSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVD
GRRLVYKFGKNARGWRENEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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