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Report for CCDS78729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78729.1 Public Mus musculus 1 Kifap3 23 108 98 CCDS HistoryNCBI Gene:16579Re-query CCDS DB by CCDS ID:78729.1Re-query CCDS DB by GeneID:16579See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78729.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027877.6 ENSMUSP00000027877.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027877.6Link to Ensembl Protein Viewer:ENSMUSP00000027877.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027877Re-query CCDS DB by Protein ID:ENSMUSP00000027877
Original member Current member NCBI NM_001305643.1 NP_001292572.1 Accepted alive Link to Nucleotide Sequence:NM_001305643.1Link to Protein Sequence:NP_001292572.1Re-query CCDS DB by Nucleotide ID:NM_001305643Re-query CCDS DB by Protein ID:NP_001292572Link to BLAST:NP_001292572.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292572.1 793 P70188-1 793 100% 0 0

Chromosomal Locations for CCDS 78729.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 163779871 163779902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163782985 163783116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163793949 163794103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163795985 163796040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163797252 163797393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163814369 163814468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163815825 163815949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163817833 163817931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163825688 163825866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163829133 163829295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163848661 163848761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163856036 163856144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163857472 163857584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163861955 163862120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163862711 163862836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163865439 163865537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163868701 163868786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163883383 163883572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163888206 163888305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163915725 163915833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGCAAGGCGAGGACGCCAGATACCTCAAAAGGAAAGTTAAAGGGGGGAATATTGATGTACATCCATCAG
AAAAAGCTCTCATTGTTCAGTATGAAGTGGAAGCTACCATTCTTGGAGAAATGGGAGATCCCATGTTGGG
AGAACGAAAGGAATGCCAAAAAATCATCCGTCTGAAGAGTCTCAATGCTAACACAGACATCACCTCTCTG
GCCCGGAAGGTGGTTGAGGAATGTAAGCTCATCCATCCCTCAAAGCTAAGCGAGGTGGAGCAGCTTTTGT
ACTATCTACAGAACCGCCGAGACTCATTGCCGGGAAAAGAAAAAAAAGAAAAATCAAGCAAGCCTAAAGA
CCCACCTCCTTTTGAAGGGATGGAGATTGACGAAGTGGCCAACATTAATGACATGGACGAATACATTGAG
CTCTTGTATGAAGACATTCCAGATAAGGTTCGGGGTTCTGCCTTGATCCTACAGCTTGCTCGAAATCCTG
ATAACCTGGAAGAGCTATTATTAAATGAAACTGCCCTGGGTGCGCTAGCAAGAGTCCTGAGAGAAGACTG
GAAACAAAGTGTTGAGTTAGCTACAAACATCATTTATATCTTCTTTTGCTTTTCTAGCTTTTCTCATTTT
CATGGACTCATCACTCACTACAAAATTGGAGCACTGTGTATGAATATCATTGATCATGAGTTAAAAAGAC
ACGAGCTTTGGCAAGAAGAACTCTCTAAGAAGAAGAAAGCTGTTGATGAAGACCTTGAAAATCAAACATT
GAGAAAGGATTATGACAAAACCTTTAAAAAATACCAAGGACTTGTGGTAAAACAAGAGCAGCTACTGAGA
GTTGCTCTCTACTTGCTTTTGAATCTTGCGGAGGACACACGTACAGAACTGAAGATGAGGAACAAGAATA
TCGTTCACATGTTGGTGAAGGCTCTTGATCGGGACAATTTTGAGCTGCTGATTCTGGTCGTGTCATTCTT
AAAGAAACTGAGTATTTTTATGGAGAATAAAAATGACATGGTAGAGATGGATATTGTTGAAAAACTGGTA
AAAATGATACCCTGTGAGCATGAAGATCTCCTGAATATCACCCTCCGGCTCCTCTTAAACCTCTCGTTTG
ACACAGGCCTGAGGAACAAGATGGTACAAGTTGGGCTTCTCCCAAAGCTCACTGCACTCCTGGGCAATGA
AAACTACAAACAAATAGCAATGTGTGTGCTTTACCATATAAGCATGGATGACCGCTTTAAGTCAATGTTT
GCATATACTGACTGCATACCACAGTTAATGAAGATGCTCTTTGAATGTTCAGATGAACGAATTGACTTGG
AGCTGATTTCTTTCTGCATTAATCTTGCTGCTAACAAGAGAAATGTCCAGCTCATCTGTGAAGGAAATGG
GCTGAAAATGCTCATGAAAAGAGCTCTGAAGCTCAAGGACCCACTGCTGATGAAGATGATCAGAAACATC
TCCCAGCATGATGGGCCCACTAAGAATTTGTTCATTGATTATGTTGGGGACCTTGCAGCCCAGATTTCCA
GTGATGAAGAGGAGGAGTTTGTAATCGAGTGTTTGGGAACGCTGGCAAATCTGACAATCCCAGATCTAGA
CTGGGAACTGGTCCTGAAGGAGTACAAGCTGGTTCCATTCCTCAAAGACAAACTAAAGCCAGGTGCCGCA
GAGGATGACCTTGTTTTAGAAGTGGTTATCATGATTGGGACGGTGTCTATGGATGACTCTTGTGCTGCCC
TACTGGCCAAATCTGGGATAATCCCAGCCCTCATCGAGCTGCTGAACGCTCAACAAGAAGATGATGAATT
TGTGTGTCAAATAATCTATGTCTTCTACCAGATGGTGTTCCATCAGGCCACAAGAGATGTCATAATCAAG
GAAACACAAGCTCCAGCATATCTCATTGACCTGATGCATGATAAAAATAATGAAATCCGGAAAGTCTGTG
ATAACACATTAGATATCATCGCAGAGTATGATGAAGAGTGGGCCAAGAAAATTCAGAGTGAGAAGTTTCG
CTGGCATAACTCTCAGTGGCTGGAGATGGTGGAGAGCCGTCAGCTGGATGAGAGCGAGCAGTACTTGTAT
GGTGATGATCGCATTGAGCCGTACATCCATGAAGGGGACATTCTTGAAAGGCCTGACCTTTTCTACAACT
CAGACGGACTAATTACCTCTGAAGGAGCCATAAGTCCAGACTTCTTCAATGATTTTCACCTCCAGAATGG
AGATGTGGTGGGGCAACACGCATTTCCTGGCAGCCTCGGGATGGATGGCTTCGGGCAGCCACTGGGGATC
CTTGGACGTCCTGCCACCGCGTATGGATTCCGCCCTGACGAACCTTACTACTACAGCTTTGGGTCTCGAT
AA

Translation (793 aa):
MQGEDARYLKRKVKGGNIDVHPSEKALIVQYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSL
ARKVVEECKLIHPSKLSEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIE
LLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSHF
HGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDLENQTLRKDYDKTFKKYQGLVVKQEQLLR
VALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLV
KMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMF
AYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKLKDPLLMKMIRNI
SQHDGPTKNLFIDYVGDLAAQISSDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPFLKDKLKPGAA
EDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIK
ETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQLDESEQYLY
GDDRIEPYIHEGDILERPDLFYNSDGLITSEGAISPDFFNDFHLQNGDVVGQHAFPGSLGMDGFGQPLGI
LGRPATAYGFRPDEPYYYSFGSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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