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Report for CCDS787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
787.1 Public Homo sapiens 1 HENMT1 24 110 108 CCDS HistoryNCBI Gene:113802Re-query CCDS DB by CCDS ID:787.1Re-query CCDS DB by GeneID:113802See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 787.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370032.9 ENSP00000359049.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370032.9Link to Ensembl Protein Viewer:ENSP00000359049.5Re-query CCDS DB by Nucleotide ID:ENST00000370032Re-query CCDS DB by Protein ID:ENSP00000359049
Original member Current member EBI ENST00000402983.5 ENSP00000385655.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402983.5Link to Ensembl Protein Viewer:ENSP00000385655.1Re-query CCDS DB by Nucleotide ID:ENST00000402983Re-query CCDS DB by Protein ID:ENSP00000385655
Original member Current member EBI ENST00000651461.1 ENSP00000499017.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651461.1Link to Ensembl Protein Viewer:ENSP00000499017.1Re-query CCDS DB by Nucleotide ID:ENST00000651461Re-query CCDS DB by Protein ID:ENSP00000499017
Original member Current member NCBI NM_001102592.2 NP_001096062.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001102592.2Link to Protein Sequence:NP_001096062.1Re-query CCDS DB by Nucleotide ID:NM_001102592Re-query CCDS DB by Protein ID:NP_001096062Link to BLAST:NP_001096062.1
Original member Current member NCBI NM_144584.3 NP_653185.2 Accepted alive Link to Nucleotide Sequence:NM_144584.3Link to Protein Sequence:NP_653185.2Re-query CCDS DB by Nucleotide ID:NM_144584Re-query CCDS DB by Protein ID:NP_653185Link to BLAST:NP_653185.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096062.1 393 Q5T8I9 393 100% 0 0
NP_653185.2 393 Q5T8I9 393 100% 0 0

Chromosomal Locations for CCDS 787.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 108648566 108648991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108650211 108650388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108651030 108651209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108654716 108654850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108655586 108655698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108657451 108657579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108659864 108659884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGAAGAAAATAATCTACAGTGCAGTAGTGTGGTTGACGGTAATTTTGAAGAAGTTCCCAGGGAGACGG
CAATTCAGTTTAAACCTCCACTATACAGACAGCGGTACCAGTTCGTTAAAAATTTAGTGGATCAACATGA
GCCTAAGAAGGTTGCAGACCTGGGATGTGGTGATACTTCACTCTTAAGGCTGCTAAAAGTCAATCCATGC
ATTGAATTGCTTGTTGGAGTAGATATTAATGAGGATAAATTACGATGGAGAGGGGATTCGTTAGCTCCTT
TCCTGGGGGATTTTCTGAAACCTCGGGATCTGAATTTGACCATCACATTGTATCATGGCTCCGTTGTGGA
GAGAGACTCTCGTTTGCTTGGATTTGACTTGATAACGTGTATTGAATTAATAGAACATTTGGATTCAGGT
GATCTGGCCAGATTTCCTGAAGTGGTATTTGGGTACCTGTCTCCATCCATGATTGTCATCAGCACACCAA
ACTCTGAATTCAATCCCCTGTTTCCATCAGTGACCTTAAGAGATTCAGATCATAAATTTGAGTGGACCAG
AATGGAGTTTCAGACCTGGGCTTTATATGTGGCAAATCGCTATGATTACTCTGTGGAGTTTACTGGTGTC
GGGGAACCACCAGCTGGAGCTGAGAATGTTGGATACTGTACCCAGATAGGAATCTTCCGGAAAAATGGAG
GAAAGGCAACAGAATCATGTCTTTCAGAGCAGCATGATCAGCATGTTTATAAAGCTGTTTTTACCACCTC
ATACCCAAGCTTACAGCAGGAAAGGTTCTTTAAACTTGTGTTGGTTAATGAGGTGTCCCAACAAGTGGAA
AGCTTAAGAGTGAGCCACCTGCCAAGGCGGAAAGAACAGGCTGGGGAACGGGGTGATAAGCCCAAAGACA
TTGGTGGCTCAAAGGCCCCTGTCCCATGCTTTGGACCAGTCTTCACAGAGGTTGAGAAGGCCAAGATAGA
GAACTCTCCCACACCCTTCTGTGTTGGAGATAAATTTTTCGTACCTCTGCAGAGACTCCTTGCGTATCCC
AAGTTGAACCGCTTATGTGCTAATGAAGAGATGATGAGATCAGTCATTGCTGACTCAATTCCTCTGAGCA
GTGATGGTTCTGCAGTGGTGGCTGACCTGCGTAATTATTTTGATGAACAGTTTGAGTTTTGA

Translation (393 aa):
MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTSLLRLLKVNPC
IELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDSRLLGFDLITCIELIEHLDSG
DLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSDHKFEWTRMEFQTWALYVANRYDYSVEFTGV
GEPPAGAENVGYCTQIGIFRKNGGKATESCLSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVE
SLRVSHLPRRKEQAGERGDKPKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYP
KLNRLCANEEMMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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