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Report for CCDS78645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78645.1 Public Mus musculus 1 Usp40 23 108 98 CCDS HistoryNCBI Gene:227334Re-query CCDS DB by CCDS ID:78645.1Re-query CCDS DB by GeneID:227334See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78645.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000187758.6 ENSMUSP00000140107.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187758.6Link to Ensembl Protein Viewer:ENSMUSP00000140107.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187758Re-query CCDS DB by Protein ID:ENSMUSP00000140107
Original member NCBI NM_001198573.1 NP_001185502.1 Updated not alive Link to Nucleotide Sequence:NM_001198573.1Link to Protein Sequence:NP_001185502.1Re-query CCDS DB by Nucleotide ID:NM_001198573Re-query CCDS DB by Protein ID:NP_001185502
Current member NCBI NM_001198573.2 NP_001185502.1 Accepted alive Link to Nucleotide Sequence:NM_001198573.2Link to Protein Sequence:NP_001185502.1Re-query CCDS DB by Nucleotide ID:NM_001198573Re-query CCDS DB by Protein ID:NP_001185502Link to BLAST:NP_001185502.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185502.1 1235 Q8BWR4-1 1235 100% 0 0

Chromosomal Locations for CCDS 78645.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 87946596 87946707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87948502 87948596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87949932 87950027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87950159 87950369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87951643 87951708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87952340 87952458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87954151 87954245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87957211 87957334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87959789 87959863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87962424 87962488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87965306 87965342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87967184 87967270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87967510 87967598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87968396 87968449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87974077 87974134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87975808 87975931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87978311 87978633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87980015 87980085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87980971 87981055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87982009 87982180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87983754 87983835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87985902 87986199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87988885 87988992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87990062 87990157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87994174 87994302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87995711 87995854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87997813 87997959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87999740 87999904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88002409 88002522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88004247 88004314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88007225 88007423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3708 nt):
ATGTTTGGGAACCTATTTGAAGAGGATTATTCCAGTGTGTCAAGTAGTCAGTATGGAAGAGGGAAGAAAT
TAAAGACTAAAGGTTTGGAGCCGCCTGCCCCTAGAGAATTCACCAATTTAAGTGGAATCAGAAATCAGGG
TGGAACCTGTTACCTCAGCTCCCTTCTTCAGACGCTTCATTTCACACCTGAATTCAGAGAAGCTTTATTT
TCTCTTGGTCCGGAAGAGCTGGGTTCTTTAGAGGATAAAGATAAACCTGATGCAAAGGTTCGGATCATAC
CTTTGCAGTTGCAGCGCTTGTTTGCCCAGCTTCTGCTCTTGGACCAGGAGGCTGCATCTACCATAGACCT
CACCGACAGCTTCGGGTGGACCAACGATGAGGAAATGAGGCAACATGATGTGCAGGAACTCAACCGAATT
CTCTTCAGTGCTTTGGAAACTTCTTTAGTTGGGACCTCTGGCCATGACCTCATTCATCGTCTATACCATG
GCACCATTGTGAACCAGATTGTTTGCAAAGAGTGTAAGAACATCAGTGAGAGGCAGGAAGACTTCTTGGA
TTTGACAGTAGCAGTCAAAAATGTATCTGGTTTAGAAGATGAACTCTGCAACATGTATGTGGAGGAAGAA
ATTTTTGACTATGACAACCTGTACCACTGTGGAACCTGTGACCGACTGGTTAAAGCAGCAAAGTCTGCCA
AATTGCGTAAGCTGCCTCCTTTTCTTACTATTTCATTACTAAGATTTAATTTTGATTTTGTGAAATGTGA
ACGCTACAAGGATACTAGCTGTTATACATTCCCCCTCCGGATCAATCTCAAGCCTTTCTGTGAACAGAGT
GAACTGGATGACATGGAATATATGTATGACCTCTTCTCCGTCATTATCCACAAAGGTGGCTGCTATGGAG
GTCATTACCATGTGTACATTAAAGATGTTGATCATCTTGGCAACTGGCAATGTCAAGAGGAGATAAGTGA
TACAAATGTGAATGTGAAAGCTCCTCAGAGTGAAGAAGAGGCTAATGATCCATTGGTGGTTCTAAAAACA
ATCTTATTGCAGGAGGAGGCCAATCAAATTCCTGTTGATCAACTGGGCCAGAAACTCTTGAAAAAAACAG
GAATATCTTGGAACAAGAAGTACAGGAAACAGCATGGACCACTGCGAAAGTTCTTACAGCTCCATCCTCA
GATATTTCTGCTCAGCACAGATGAAAGTACAGTTAGTCTCCTGAGGAACCATCTTACCCAGGCCCCATCT
GACCTACAGAGCTGTGAACAGATTCTACATACACTTGCTTCAGAATCCCCAGGCTTGAATGATGACACCA
GTTGCCCACACTGGTTTGATATCAATGATTCCAAAGTCCATCCAATCAGAGAGAAAGATATCACACAGCA
GTTCCAGGGTAAAGAAAGTGCCTACATGCTGTTTTATCGGAAAGCCACGTTACAAAGGCCCCCTGAAGCT
CGAGCCAATCCAAGATACAGAGTTCCATGTCACTTGCTGAAGGAAATGGATGCAGCCAACATTCTACTGC
AGATGAGAAGGGCAGAATGTGACTCTGCAAACAGTACTTTTGAGTTGCATCTTCATTTGGGTCCTCACTA
CCGTTTCTTCAATGGGGCTCTTCACCCTGCAGTCTCTGAGACAGAAAGCGTGTGGGACTTAACGTTTGAT
AAAAGAAAAACTTTAGGAGATCTCCGTCAGTCAATATTTCAGCTATTGGAATGTTGGGAAGGAGACATGG
TTCTTAGTGTTGCGAAGCGTGTGCCAGCAGGACTTCATGTGTACCACACCCTCGATGGAGATGACTTGAC
ACTGTGTGAAGCTGAGGTTGCTGATGGGGAAGACATCTTTGTATGGAATGGGGTAGAGGTTGGTGGAGTC
CAAATTCAGACTGGTTTTGATTGTGAACCTCTGCTGTTAAACATTCTTCATCTAGAACTAAGTGGTGAAG
GCTCAAAATGTGAGCAGTTGGTGGAGTCACCACATGTCTTTCCTGCTAATGCAGAAGTGGGCGCTGTGTT
CACAGCCTTGGGCACCCCAGCAGGTGCCATCCTCATGAACAGTGTGGAGTCTGCAGATGGAGAGTGCTGG
ACTGCTGTTCCCAAAGAAGACATGAAGAAGACGTTCAGAGAACAAGGTCTCAGAAATGGAAGCTTAATTT
TGGTTCAAGATTCAGACAGTGATAATAACAGTCTGTTGCCCAAACAAGGGAGATGGACCAACAGCATGAA
TGAGCTCAACTGGCTCCAAGTGAAAAATTTCTGCCAGTCAGAATCTGAAGAGAAGCAGGTTCAGATAGCC
GTGACCATGCACACAGTGGTGTTTGATATTCGAATTAAAGCCATAAAGGAATTAAAATTAATGAAGGAAC
TAGCTGAGAACAGCTGTTTGAGACCCATTGATAGAAACGGGAAGCTTCTTTGTCCAGTCCCAGACAGTAG
CACTTTGGAGGAAGCAGAGGTGAAGATGGGGAGCTCCGTGGGCCTGTGTCTGGGAAAAGCACCAACTTCC
TCTCAGCTGTTCCTGTTTTTTGCTCTGGGGACTGACATTCACCCTGGGGCAGAGATGGACATCATAGTAG
AAGAAACACTCTCAGTGAGAGATTGTTTAAAGATAATGCTGGAGAAGTCAGGTCAGCAAGGAGAGATTTG
GCACTTAAGGAAAATGGATTGGTGCTATGAAGCTGGTGAACCTTTATGTGAAGAGGATGCAACACTGAAA
GAGCTTATGATACGTTCTGGGGATACTTTGCTTTTAACTGAAGGGAAACTTCCTCCTCCGGGTCACTTGA
AGATGCCCATCTGGTGGTACCAGCCTGCAAGGCTGTCAGGACACTGTGAGAGTCGGGACCACTTAAACTG
TGCCTTTTCTCAAGATAGCACCTGGAGGGCTGCTCCCACCCAAGGTGCTCCTGGCCCCGAGCCTGCAGAA
GTCTCTCTCCTCTACTTGGGGGATATGGAGATCTCAGAAGAGGCCACATTGGTGGAACTGAAGTCTCAGG
CCTTGGCCTTGCCTTCTGTTTCGAAGCTCGCTGTCCAGTCCACAGCCCTGCTCAGAGTCTGGACAGTGGA
GAGCAAGCGCCCCAGCAGACTCTTGCGCACTAACTGGCGGCAGCTCAAGGAGTACAGACTGGGCCGGAGA
GCAGAGCTCTGCCTAGAGCTCCTTCAAAAAGAGGAGGACTTGGGGCCCCGAGATGTACTGCTGAGGACAC
AGCTACGCATCCCTGGTGAGAGAGCCTACTCCCTGGCGACAGACCTGATATGGGACACCACCAGAGGATG
GACTGCTGGCTCCTTGAGGCAGAGAGTAGCTGACTTCTATTCTCTTCCTGTGGAGAAAATTGAAATTGCC
AAATATTTTCCTGAAAAGTTTGAGTGGCTTCCAATATCTAGCTGGAATCAGCAAGTTGCCAAAAGAAAAA
AGAAGAAAAACCAAGATACTTTGCAAGGGGGACCATATTACTTGAAAGATGGAGACACTATTGGCATTAA
GAATCTCCTGTTTGATGACAATGATGATTTCAGCACAATCAGAGATGACATTGGAAAGGAGAACCAGAAG
CGGCTAGCTTTGGAAAAAAAGAAAAGCCGAGAAGTCCACCGTGCACAGAGCAGCGATTTGTTCTCCAATG
CAGGGGTGCCCGCTAGGTTCCGGGGACCAGAAGCTTCTCTGTCCATCCACGTTGCAAGCTTCAGATAG

Translation (1235 aa):
MFGNLFEEDYSSVSSSQYGRGKKLKTKGLEPPAPREFTNLSGIRNQGGTCYLSSLLQTLHFTPEFREALF
SLGPEELGSLEDKDKPDAKVRIIPLQLQRLFAQLLLLDQEAASTIDLTDSFGWTNDEEMRQHDVQELNRI
LFSALETSLVGTSGHDLIHRLYHGTIVNQIVCKECKNISERQEDFLDLTVAVKNVSGLEDELCNMYVEEE
IFDYDNLYHCGTCDRLVKAAKSAKLRKLPPFLTISLLRFNFDFVKCERYKDTSCYTFPLRINLKPFCEQS
ELDDMEYMYDLFSVIIHKGGCYGGHYHVYIKDVDHLGNWQCQEEISDTNVNVKAPQSEEEANDPLVVLKT
ILLQEEANQIPVDQLGQKLLKKTGISWNKKYRKQHGPLRKFLQLHPQIFLLSTDESTVSLLRNHLTQAPS
DLQSCEQILHTLASESPGLNDDTSCPHWFDINDSKVHPIREKDITQQFQGKESAYMLFYRKATLQRPPEA
RANPRYRVPCHLLKEMDAANILLQMRRAECDSANSTFELHLHLGPHYRFFNGALHPAVSETESVWDLTFD
KRKTLGDLRQSIFQLLECWEGDMVLSVAKRVPAGLHVYHTLDGDDLTLCEAEVADGEDIFVWNGVEVGGV
QIQTGFDCEPLLLNILHLELSGEGSKCEQLVESPHVFPANAEVGAVFTALGTPAGAILMNSVESADGECW
TAVPKEDMKKTFREQGLRNGSLILVQDSDSDNNSLLPKQGRWTNSMNELNWLQVKNFCQSESEEKQVQIA
VTMHTVVFDIRIKAIKELKLMKELAENSCLRPIDRNGKLLCPVPDSSTLEEAEVKMGSSVGLCLGKAPTS
SQLFLFFALGTDIHPGAEMDIIVEETLSVRDCLKIMLEKSGQQGEIWHLRKMDWCYEAGEPLCEEDATLK
ELMIRSGDTLLLTEGKLPPPGHLKMPIWWYQPARLSGHCESRDHLNCAFSQDSTWRAAPTQGAPGPEPAE
VSLLYLGDMEISEEATLVELKSQALALPSVSKLAVQSTALLRVWTVESKRPSRLLRTNWRQLKEYRLGRR
AELCLELLQKEEDLGPRDVLLRTQLRIPGERAYSLATDLIWDTTRGWTAGSLRQRVADFYSLPVEKIEIA
KYFPEKFEWLPISSWNQQVAKRKKKKNQDTLQGGPYYLKDGDTIGIKNLLFDDNDDFSTIRDDIGKENQK
RLALEKKKSREVHRAQSSDLFSNAGVPARFRGPEASLSIHVASFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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