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Report for CCDS78571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78571.1 Public Mus musculus 1 Tsga10 23 108 98 CCDS HistoryNCBI Gene:211484Re-query CCDS DB by CCDS ID:78571.1Re-query CCDS DB by GeneID:211484See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114902.7 ENSMUSP00000110552.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114902.7Link to Ensembl Protein Viewer:ENSMUSP00000110552.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114902Re-query CCDS DB by Protein ID:ENSMUSP00000110552
Original member Current member NCBI NM_001290721.1 NP_001277650.1 Accepted alive Link to Nucleotide Sequence:NM_001290721.1Link to Protein Sequence:NP_001277650.1Re-query CCDS DB by Nucleotide ID:NM_001290721Re-query CCDS DB by Protein ID:NP_001277650Link to BLAST:NP_001277650.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277650.1 690 Q6NY15-2 690 100% 0 0

Chromosomal Locations for CCDS 78571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37760945 37761095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37761430 37761534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37763307 37763509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37783817 37784026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37801720 37801905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37804629 37804739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37806937 37807105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37810972 37811027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37815532 37815686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37819525 37819640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37834186 37834337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37835258 37835335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37835422 37835592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37840499 37840657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37841185 37841235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGATGAGAAATAGATCTAAGAGTCCGAGACGCCCATCGCCAACTTCCCGGGCTGCAAACTGTGATGTAG
AGCTTTTGAAGTCAACTGCAAGAGACCGTGAAGAGCTAAAGTGTATGCTGGAAAAATATGAACGTCATTT
GGCAGAAATCCAGGGCAACGTCAAGGTTCTCACATCTGAGAGAGACAAGACCTTCCTCCTTTATGAGCAG
GCACAGGAAGAAATTGCTCGACTTCGACGAGAAATGATGAAAAGCTGTAAGTCTCCTAAGTCAACCACAG
CACATGCTATTCTTCGTCGGGTAGAGACGGAGAGAGATGTAGCCTTCACTGACCTACGAAGAATGACCAC
AGAGCGAGACAGTCTGAGAGAAAGGCTCAAGATTGCTCAAGAGACAGCGTTCAACGAGAAGGCTCACTTG
GAACAGCGGATAGAGGAGCTGGAGTGCACAGTTCACAACCTTGATGATGAGCGCATGGAACAGATGGCAA
ACATGACTTTGATGAAGGAAACCATAACCACTGTGGAAAAAGAAATGAAATCATTAGCAAGAAAGGCAAT
GGACACCGAGAGTGAGCTTGGCAGACAAAAAGCAGAGAATAATTCTTTGAGACTTTTATATGAAAACACA
GAAAAAGATCTCTCTGATACTCAGCGACATCTTGCTAAGAAAAAATATGAGCTACAGCTTACTCAGGAGA
AAATTATGTGCTTGGATGAAAAAATTGATAATTTCACGAGGCAAAATATTGCACAGCGAGAAGAAATCAG
CATTCTTGGTGCAACCCTCAATGACCTGGCTAAAGAAAAGGAATGCCTGCAAGCGTGTCTGGATAAAAAG
TCTGAGAACATTGCATCCCTTGGCGAGAGCTTGGCAATGAAAGAAAAAACCATTTCAGGCATGAAGAATA
TCATTGCTGAGATGGAACAGGCATCAAGACAGTCTACTGAAGCCCTCATTATGTGCGAACAAGATATTTC
CAGGATGCGCCGGCAGTTGGACGAGACAAATGATGAGCTGGGTCAGATTGCCAGGGAGAGAGATATCTTG
GCTCATGAGAATGACAATCTTCAAGAACAGTTTGCCAAAGTCAAACAAGAAAACCAGGCACTGTCCAAAA
AACTGAATGATACTCATAACGAACTCAGTGACATAAAGCAGAAGGTCCAGGACACGAATCTGGAGGTTAA
CAAGTTGAAGAACATATTAAAGTCTGAGGAATCTGAGAACCGGCAAATAATGGAACAACTCCGAAAAGCC
AATGAAGATGCTGAAAACTGGGAAAATAAGGCCCGCCAGACAGAGGCAGAAAACAACACCCTCAAACTGG
AACTTATCACTGCTGAAGCAGAGGGCAACAGATTAAAGGAAAAAGTTGATGCCCTTAACAGAGAGGTTGA
GCAACACCTAAACGCAGAGCGCTCTTACAAATCCCAGATTGCAACTTTACACAAGTCTCTTGTGAAGATG
GAGGAGGAGCTTCAGAAGGTTCAGTTTGAGAAGGTGTCTGCTCTCGCAGATTTGTCTTCCACAAGGGAAC
TCTGCATAAAACTCGACTCAAGCAAAGAACTTCTTAATCGACAGCTGGTTGCCAAAGATCAGGAAATAGA
AATGATGGAGAATGAGCTGGACTCAGCGCGCTCTGAAATTGAACTGCTCCGGAGTCAGATGACAAACGAG
AGGATCTCCATGCAGAATCTCGAGGCTCTGCTGGTGGCCAACCGGGACAAAGAGTACCAGTCTCAGATAG
CACTGCAGGAAAAGGAGTCTGAGATCCAGTTGCTGAAGGAGCACCTCTGCCTGGCTGAGAACAAAATGGC
CATCCAGAGCAGAGACGTGGCACAGTTCAGAAATGTTGTAACGCAGTTAGAAGCAGATTTGGACATTACC
AAAAGGCAACTCGGGACAGAACGTTTTGAAAGGGAAAGGGCTGTCCAAGAACTTCGCCGCCAGAATTACT
CAAGCAATGCCTATAATTTGGGTCCAATGAAGCCAAATACAAAATGCCACTCACCAGAGCGTGCTCACCA
TCGATCTCCTGACCGAGGCCTCGACCGATCATTGGAAGAGTAA

Translation (690 aa):
MMRNRSKSPRRPSPTSRAANCDVELLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQ
AQEEIARLRREMMKSCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHL
EQRIEELECTVHNLDDERMEQMANMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENT
EKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGATLNDLAKEKECLQACLDKK
SENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELGQIARERDIL
AHENDNLQEQFAKVKQENQALSKKLNDTHNELSDIKQKVQDTNLEVNKLKNILKSEESENRQIMEQLRKA
NEDAENWENKARQTEAENNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQIATLHKSLVKM
EEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNE
RISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDIT
KRQLGTERFERERAVQELRRQNYSSNAYNLGPMKPNTKCHSPERAHHRSPDRGLDRSLEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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