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Report for CCDS7856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7856.1 Public Homo sapiens 11 SLC17A6 24 110 108 CCDS HistoryNCBI Gene:57084Re-query CCDS DB by CCDS ID:7856.1Re-query CCDS DB by GeneID:57084See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7856.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263160.4 ENSP00000263160.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263160.4Link to Ensembl Protein Viewer:ENSP00000263160.3Re-query CCDS DB by Nucleotide ID:ENST00000263160Re-query CCDS DB by Protein ID:ENSP00000263160
Original member Current member NCBI NM_020346.3 NP_065079.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020346.3Link to Protein Sequence:NP_065079.1Re-query CCDS DB by Nucleotide ID:NM_020346Re-query CCDS DB by Protein ID:NP_065079Link to BLAST:NP_065079.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065079.1 582 Q9P2U8 582 100% 0 0

Chromosomal Locations for CCDS 7856.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 22338534 22338619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22341528 22341780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22343247 22343365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22359413 22359527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22360897 22360984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22362739 22362825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22365547 22365689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22370039 22370188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22374755 22374887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22375982 22376092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22376545 22376672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22377405 22377740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGGAATCCGTAAAACAAAGGATTTTGGCCCCAGGAAAAGAGGGGCTAAAGAATTTTGCTGGAAAATCAC
TCGGCCAGATCTACAGGGTGCTGGAGAAGAAGCAAGACACCGGGGAGACAATCGAGCTGACGGAGGATGG
GAAGCCCCTAGAGGTGCCCGAGAGGAAGGCGCCGCTGTGCGACTGCACGTGCTTCGGCCTGCCCCGCCGC
TACATTATCGCCATCATGAGCGGCCTGGGCTTCTGCATCTCCTTCGGTATCCGCTGCAACCTGGGCGTGG
CCATTGTGGACATGGTCAACAACAGCACCATCCACCGCGGGGGCAAGGTCATCAAGGAGAAAGCCAAATT
CAACTGGGACCCGGAAACCGTGGGGATGATCCACGGTTCCTTCTTTTGGGGCTACATCATCACTCAGATT
CCGGGAGGCTACATCGCGTCTCGGCTGGCAGCCAACAGGGTTTTCGGAGCTGCCATACTTCTTACCTCTA
CCCTAAATATGCTAATTCCATCAGCAGCCAGAGTGCATTATGGATGTGTCATCTTTGTCAGAATACTGCA
GGGACTTGTTGAGGGTGTGACCTACCCAGCATGTCATGGGATATGGAGCAAATGGGCCCCACCTCTAGAG
AGGAGTAGACTGGCAACCACCTCCTTTTGTGGTTCCTATGCCGGAGCTGTGATTGCAATGCCTTTAGCTG
GCATTCTTGTGCAGTACACTGGCTGGTCTTCAGTGTTTTATGTCTACGGAAGCTTTGGAATGGTCTGGTA
CATGTTTTGGCTTTTGGTGTCTTATGAAAGTCCTGCAAAGCATCCTACTATTACAGATGAAGAACGTAGG
TACATAGAAGAAAGCATTGGAGAGAGTGCAAATCTTTTAGGTGCAATGGAAAAATTCAAGACTCCATGGA
GGAAGTTTTTTACATCCATGCCAGTCTATGCAATAATTGTTGCAAACTTCTGCAGAAGCTGGACTTTTTA
TTTATTGCTTATTAGTCAGCCAGCATATTTTGAGGAAGTCTTTGGATTTGAAATTAGCAAGGTTGGTATG
CTATCTGCTGTGCCACACTTAGTAATGACAATTATTGTGCCTATTGGGGGACAAATTGCAGATTTTCTAA
GAAGCAAGCAGATTCTTTCAACTACGACAGTGAGAAAGATCATGAATTGTGGTGGTTTTGGCATGGAAGC
CACACTGCTCCTGGTCGTTGGCTATTCTCATACTAGAGGGGTAGCAATCTCATTCTTGGTACTTGCAGTG
GGATTCAGTGGATTTGCTATATCTGGTTTCAATGTTAACCACTTGGATATCGCTCCAAGATATGCCAGTA
TCTTAATGGGCATTTCGAATGGTGTTGGCACATTGTCAGGAATGGTTTGTCCTATCATTGTTGGTGCAAT
GACAAAGAATAAGTCACGTGAAGAGTGGCAGTATGTCTTCCTGATCGCTGCCCTAGTCCACTATGGTGGA
GTTATATTTTATGCAATATTTGCCTCAGGAGAGAAACAACCCTGGGCAGACCCGGAGGAAACAAGTGAAG
AAAAATGTGGATTTATTCATGAAGATGAACTCGATGAAGAAACAGGGGACATTACTCAAAATTATATAAA
TTATGGTACCACCAAGTCTTATGGTGCCACAACACAGGCCAATGGAGGTTGGCCTAGTGGTTGGGAAAAG
AAAGAGGAATTTGTACAAGGAGAAGTACAAGACTCACATAGCTATAAGGACCGAGTTGATTATTCATAA

Translation (582 aa):
MESVKQRILAPGKEGLKNFAGKSLGQIYRVLEKKQDTGETIELTEDGKPLEVPERKAPLCDCTCFGLPRR
YIIAIMSGLGFCISFGIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGMIHGSFFWGYIITQI
PGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLE
RSRLATTSFCGSYAGAVIAMPLAGILVQYTGWSSVFYVYGSFGMVWYMFWLLVSYESPAKHPTITDEERR
YIEESIGESANLLGAMEKFKTPWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGM
LSAVPHLVMTIIVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAV
GFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKNKSREEWQYVFLIAALVHYGG
VIFYAIFASGEKQPWADPEETSEEKCGFIHEDELDEETGDITQNYINYGTTKSYGATTQANGGWPSGWEK
KEEFVQGEVQDSHSYKDRVDYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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