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Report for CCDS78556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78556.1 Public Mus musculus 1 Lmbrd1 23 108 98 CCDS HistoryNCBI Gene:68421Re-query CCDS DB by CCDS ID:78556.1Re-query CCDS DB by GeneID:68421See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78556.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095062.9 ENSMUSP00000092672.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095062.9Link to Ensembl Protein Viewer:ENSMUSP00000092672.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095062Re-query CCDS DB by Protein ID:ENSMUSP00000092672
Original member Current member NCBI NM_001310483.1 NP_001297412.1 Accepted alive Link to Nucleotide Sequence:NM_001310483.1Link to Protein Sequence:NP_001297412.1Re-query CCDS DB by Nucleotide ID:NM_001310483Re-query CCDS DB by Protein ID:NP_001297412Link to BLAST:NP_001297412.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297412.1 467 Q8K0B2-3 467 100% 0 0

Chromosomal Locations for CCDS 78556.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 24685547 24685573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24692941 24693001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24704821 24704918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24705977 24706044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24711512 24711600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24714909 24714982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24728546 24728671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24731747 24731899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24743883 24743947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24744256 24744358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24744866 24744970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24746805 24746954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24748800 24748878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24762192 24762283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24762623 24762736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGAAAAATCAAAATGGCACATTCAAGGACTGGGCTGACGCCAATGTCACCGTACAGATTGAGAATACCG
TTCTGTATGGCTACTATACTCTGTATTCTGTCATTCTCTTCTGTGTGTTCTTCTGGATCCCGTTTGTGTA
CTTCTACTACGAAGAGAAGGATGAGGACGACGCCAGCAAATGCACCCAAATTAAAACGGCGCTCAAGTAC
ACTTTGGGATTTGTTGTGATCTGCGCTCTGCTGCTTCTCGTTGGTGCCTTTGTGCCTCTGCATCTGCCCA
ACAACAACAACTCAACAGAGTGGGAAAAGGTGAAGCTCCTGTTTGAAGACCTTGGAACTGGTCAAGGCCT
GGCAGCTCTGTCCTTTTCCATCAGCTCTCTGACCTTGATTGGGATGCTGGCGGCCATAACCTACACAGCG
TACGGCATGTCGGCATTACCTTTAAACCTAATCAAAGGCACTAGAAGCACTGCCTACGAGCGCCTGGAGA
ACACGGAGGACATCGAGGAAGTGGAGCAGCACATTCAGACGATTCGATCCAAGAGCAAAGATGGTCGACC
TTTGCCAGCGAGGGATAGACGTGCCTTAAAGCAATGTGAAGAAAGACTAAGAACGCTTAGGAAAAGAGAG
CGGCACTTGGAATTCATTGAAAACAGCTGGTGGACGAAATTTTGTGGTGCCCTGCGCCCCCTGAAGATCA
TTTGGGGAATATTTTTCATCCTCGTTGCGTTGCTGTTTGTAATTTCTCTCTTCCTGTCAAATTTGGATAA
AGCTCTTCATTCAGCAGGAATAGATTCGGGTTTCATCATCTTCGGAACTAACCTGAGCAATCCACTGAAC
ATGCTTTTGCCGTTGTTACAAACAGTGTTCCCTCTTGATTACATTCTTATAACAATTATTATTATGTACT
TTATTTTTACTTCGATGGCAGGAATTCGAAACATTGGCATTTGGTTCTTTTGGATTAGGTTATATAAAAT
CAGAAGAGGGCGAACCAGGCCTCAGGCACTCTTATTTCTCTGCATGATCCTCCTGCTCATTGTCCTTCAT
ACCAGCTACATGATCTACAGTCTCGCGCCTCAGTACGTGATGTACGGAAGCCAGAATTACTTAATAGAGA
GCAATATAACTTCTGATGCCCATAAAGGCAATTCAACCCTCGCTGTGCCAAAAAGATGTGACGCAGATGC
CCCTAAAGATCAGTGTACTGTTACCCGAACATACATTTTCCTCCACAAGTTCTGGTTCTTCAGTGCTGCA
TACTATTTTGGTAACTGGGCCTTTCTCGTGGTGTTCTTGATCGGATTAATTGTATCCTGCTGTAAAGGGA
AGAAGTCAGTCATAGAAGGAGTGGATGAAGATTCGGACTTAAGTGATGATGAGCCGTCTGCCTACTCTGC
GTGA

Translation (467 aa):
MKNQNGTFKDWADANVTVQIENTVLYGYYTLYSVILFCVFFWIPFVYFYYEEKDEDDASKCTQIKTALKY
TLGFVVICALLLLVGAFVPLHLPNNNNSTEWEKVKLLFEDLGTGQGLAALSFSISSLTLIGMLAAITYTA
YGMSALPLNLIKGTRSTAYERLENTEDIEEVEQHIQTIRSKSKDGRPLPARDRRALKQCEERLRTLRKRE
RHLEFIENSWWTKFCGALRPLKIIWGIFFILVALLFVISLFLSNLDKALHSAGIDSGFIIFGTNLSNPLN
MLLPLLQTVFPLDYILITIIIMYFIFTSMAGIRNIGIWFFWIRLYKIRRGRTRPQALLFLCMILLLIVLH
TSYMIYSLAPQYVMYGSQNYLIESNITSDAHKGNSTLAVPKRCDADAPKDQCTVTRTYIFLHKFWFFSAA
YYFGNWAFLVVFLIGLIVSCCKGKKSVIEGVDEDSDLSDDEPSAYSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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