NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS78297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78297.1 Public Homo sapiens 8 ARHGEF10 24 110 108 CCDS HistoryNCBI Gene:9639Re-query CCDS DB by CCDS ID:78297.1Re-query CCDS DB by GeneID:9639See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78297.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000520359.5 ENSP00000427909.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520359.5Link to Ensembl Protein Viewer:ENSP00000427909.1Re-query CCDS DB by Nucleotide ID:ENST00000520359Re-query CCDS DB by Protein ID:ENSP00000427909
Original member Current member NCBI NM_001308152.2 NP_001295081.1 Accepted alive Link to Nucleotide Sequence:NM_001308152.2Link to Protein Sequence:NP_001295081.1Re-query CCDS DB by Nucleotide ID:NM_001308152Re-query CCDS DB by Protein ID:NP_001295081Link to BLAST:NP_001295081.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295081.1 1306 O15013-7 1306 100% 0 0

Chromosomal Locations for CCDS 78297.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 1843400 1843436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1857960 1858115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1859897 1860184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1864370 1864436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1866526 1866602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1869194 1869250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1876571 1876734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1882635 1882749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1885601 1885707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1893569 1893646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1894393 1894572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1896333 1896449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1898433 1898525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1903281 1903451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1905571 1905716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1909295 1909470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1922964 1923079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1923468 1923595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1923774 1923874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1925283 1925404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1926377 1926463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1928427 1928650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1929286 1929443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1933800 1933942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1945481 1945655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1952705 1952827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1956749 1957263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3921 nt):
ATGGACCAGCGAGAGCCCCTGCCTCCCGCTCCTGCAGAAAATGAAATGAAATATGATACCAATAATAATG
AAGAGGAAGAGGGAGAACAGTTCGATTTTGACAGTGGAGATGAAATCCCAGAAGCGGACAGACAGGCCCC
ATCCGCCCCTGAGACAGGAGGTGCTGGAGCCAGTGAAGCCCCTGCACCCACAGGAGGTGAGGATGGAGCT
GGAGCAGAAACCACCCCAGTGGCAGAGCCTACTAAGCTGGTGCTCCCGATGAAAGTCAACCCATATTCTG
TCATCGACATCACGCCATTCCAGGAGGACCAGCCGCCCACCCCCGTGCCCAGCGCTGAGGAGGAGAATGT
GGGTCTCCATGTGCCCTGCGGGTACTTGGTGCCTGTACCCTGCGGCTATGCGGTGCCCTCCAACCTGCCC
CTCCTGCTGCCCGCCTACTCCAGCCCGGTCATCATCTGCGCCACGTCCCTGGACGAAGAAGCAGAAACAC
CAGAAGTCACAGAAGATCGCCAGCCCAATTCTCTGAGTTCCGAGGAGCCTCCAACCAGTGAAGATCAAGT
CGGTCGAGAGGACAGCGCACTTGCCCGCTGGGCCGCAGACCCGGCCAACACAGCCTGGATGGAGAATCCA
GAGGAAGCAATTTACGATGACGTTCCAAGGGAAAACTCAGACTCTGAACCAGATGAAATGATTTATGATG
ATGTTGAGAATGGGGATGAAGGTGGAAACAGCTCCTTGGAATACGGATGGAGTTCGAGTGAATTTGAAAG
TTACGAAGAGCAGAGTGACTCGGAGTGCAAGAATGGGATTCCCAGGTCCTTCCTGCGCAGCAACCACAAA
AAGCAAATGCAGAAGCTCGTGAAGGCCGCGAAGGACGGCACCAAGGACGGGCTGGAGAGGACCAGGGCAG
CCGTGAAGAGGGGCCGCTCCTTCATCAGGACCAAGTCTCTCATCGCACAGGATCACAGATCTTCTCTTGA
GGAAGAACAGAATTTGTTCATTGATGTTGACTGCAAGCACCCGGAAGCCATCTTGACCCCGATGCCCGAG
GGTTTATCTCAGCAGCAGGTTGTAAGAAGATATATACTGGGTTCAGTTGTCGACAGTGAAAAGAACTACG
TAGATGCTCTTAAGAGGATTTTGGAGCAATATGAGAAGCCGCTGTCTGAGATGGAGCCAAAGGTTCTGAG
TGAGAGGAAGCTGAAGACGGTGTTCTACCGAGTCAAAGAGATCCTGCAGTGCCACTCGCTATTTCAGATC
GCGCTGGCCAGCCGCGTTTCCGAGTGGGACTCCGTGGAAATGATAGGCGATGTCTTCGTGGCTTCGTTTT
CTAAGTCCATGGTGCTGGATGCATACAGTGAATATGTGAACAATTTCAGCACAGCCGTGGCAGTCCTCAA
GAAAACATGTGCCACAAAGCCCGCTTTTCTTGAATTTTTAAAGCAGGAACAGGAGGCCAGCCCCGATCGA
ACCACGCTCTACAGCCTGATGATGAAGCCCATCCAGAGGTTCCCACAGTTCATCCTCCTGCTCCAGGACA
TGCTGAAGAACACCTCCAAAGGCCACCCCGACAGGCTGCCTCTTCAGATGGCCCTGACAGAGCTCGAAAC
ACTAGCAGAGAAGTTAAATGAAAGAAAGAGAGATGCTGATCAACGCTGTGAAGTGAAGCAAATAGCCAAA
GCCATAAACGAAAGATACCTGAACAAGCTTCTCAGCAGTGGAAGCCGATACCTCATTCGATCAGATGATA
TGATAGAAACAGTTTACAACGACAGAGGAGAGATTGTTAAAACCAAAGAACGCCGAGTCTTCATGTTAAA
TGATGTGTTAATGTGTGCCACCGTCAGCTCACGCCCCTCTCATGACAGCCGTGTGATGAGCAGCCAGAGG
TACTTGCTGAAGTGGAGCGTTCCACTGGGACATGTGGACGCCATCGAGTATGGCAGCAGCGCAGGCACGG
GCGAGCACAGCAGGCACCTTGCCGTTCACCCGCCGGAGAGCCTGGCCGTGGTTGCTAACGCGAAACCAAA
CAAAGTTTACATGGGGCCAGGACAACTGTATCAAGATTTACAAAACTTGTTGCATGACTTAAATGTAATT
GGCCAAATCACTCAGCTGATAGGAAACCTTAAAGGAAACTATCAGAACTTAAACCAGTCAGTAGCCCATG
ACTGGACATCAGGTTTACAAAGGCTTATTTTGAAGAAAGAAGATGAAATCAGAGCTGCGGACTGCTGCAG
AATTCAGTTACAGCTTCCCGGGAAGCAGGACAAATCTGGGCGACCGACGTTCTTTACAGCTGTGTTCAAT
ACGTTCACCCCTGCCATCAAGGAGTCCTGGGTCAACAGCTTACAGATGGCCAAGCTCGCCCTAGAAGAGG
AGAACCACATGGGCTGGTTCTGTGTGGAAGACGATGGGAATCACATTAAAAAGGAGAAGCATCCTCTCCT
CGTCGGACACATGCCCGTGATGGTGGCCAAGCAGCAGGAGTTCAAGATTGAATGTGCTGCTTATAACCCT
GAACCTTACCTAAATAATGAAAGCCAGCCAGATTCATTTTCCACGGCACATGGTTTCCTGTGGATCGGAA
GTTGCACCCATCAAATGGGTCAGATTGCCATCGTCTCGTTTCAAAATTCCACTCCCAAAGTCATTGAGTG
CTTCAACGTGGAATCTCGCATCCTGTGCATGCTGTACGTTCCCGTCGAGGAGAAGCGCAGAGAGCCTGGG
GCACCCCCGGACCCCGAGACCCCGGCCGTGAGAGCTTCTGATGTCCCCACGATCTGTGTAGGGACGGAGG
AGGGAAGCATTTCCATTTATAAAAGCAGTCAAGGCTCCAAGAAAGTGAGACTTCAGCACTTTTTCACTCC
TGAGAAGTCCACAGTCATGAGCCTGGCTTGCACGTCTCAGAGCCTGTACGCTGGCCTGGTCAACGGGGCA
GTCGCCAGCTACGCCAGAGCCCCAGATGGATCCTGGGATTCAGAACCTCAAAAAGTGATCAAGTTAGGCG
TCCTACCAGTTAGAAGTCTACTCATGATGGAAGACACGTTGTGGGCGGCTTCCGGAGGTCAAGTCTTCAT
CATCAGTGTGGAGACTCATGCTGTAGAGGGTCAGCTGGAGGCCCACCAGGAGGAAGGCATGGTGATCTCC
CACATGGCCGTGTCCGGCGTCGGGATCTGGATTGCCTTCACCTCAGGGTCCACGCTCCGCCTTTTTCACA
CGGAAACTCTCAAGCACCTGCAGGACATCAACATCGCCACCCCTGTTCACAACATGCTGCCAGGGCACCA
GCGGCTGTCGGTGACGAGCCTGCTCGTCTGCCACGGATTGCTGATGGTCGGCACCAGCCTGGGAGTCCTC
GTGGCCCTGCCGGTCCCACGTCTGCAAGGGATTCCCAAAGTGACCGGAAGAGGCATGGTCTCCTACCATG
CACACAACAGTCCTGTCAAATTCATCGTCCTGGCCACGGCTCTGCACGAGAAAGACAAGGACAAATCCAG
GGACAGCCTGGCTCCTGGCCCCGAGCCTCAGGACGAAGACCAGAAGGACGCACTTCCGAGTGGAGGAGCT
GGTTCATCTCTGAGCCAGGGTGACCCTGACGCAGCCATCTGGTTGGGAGATTCGCTGGGATCGATGACTC
AGAAAAGCGACCTGTCCTCCTCATCTGGGTCCCTGAGCTTGTCTCACGGCTCCAGCTCTCTAGAGCACAG
ATCAGAGGACAGCACCATCTATGATCTCCTGAAGGATCCTGTCTCGCTGAGAAGCAAAGCACGCCGGGCC
AAGAAAGCCAAGGCCAGCTCGGCGCTGGTGGTCTGTGGAGGGCAGGGCCACCGCCGGGTGCACAGGAAGG
CCCGGCAGCCCCACCAGGAAGAGCTGGCGCCGACCGTCATGGTCTGGCAGATCCCTCTGCTGAATATATA
A

Translation (1306 aa):
MDQREPLPPAPAENEMKYDTNNNEEEEGEQFDFDSGDEIPEADRQAPSAPETGGAGASEAPAPTGGEDGA
GAETTPVAEPTKLVLPMKVNPYSVIDITPFQEDQPPTPVPSAEEENVGLHVPCGYLVPVPCGYAVPSNLP
LLLPAYSSPVIICATSLDEEAETPEVTEDRQPNSLSSEEPPTSEDQVGREDSALARWAADPANTAWMENP
EEAIYDDVPRENSDSEPDEMIYDDVENGDEGGNSSLEYGWSSSEFESYEEQSDSECKNGIPRSFLRSNHK
KQMQKLVKAAKDGTKDGLERTRAAVKRGRSFIRTKSLIAQDHRSSLEEEQNLFIDVDCKHPEAILTPMPE
GLSQQQVVRRYILGSVVDSEKNYVDALKRILEQYEKPLSEMEPKVLSERKLKTVFYRVKEILQCHSLFQI
ALASRVSEWDSVEMIGDVFVASFSKSMVLDAYSEYVNNFSTAVAVLKKTCATKPAFLEFLKQEQEASPDR
TTLYSLMMKPIQRFPQFILLLQDMLKNTSKGHPDRLPLQMALTELETLAEKLNERKRDADQRCEVKQIAK
AINERYLNKLLSSGSRYLIRSDDMIETVYNDRGEIVKTKERRVFMLNDVLMCATVSSRPSHDSRVMSSQR
YLLKWSVPLGHVDAIEYGSSAGTGEHSRHLAVHPPESLAVVANAKPNKVYMGPGQLYQDLQNLLHDLNVI
GQITQLIGNLKGNYQNLNQSVAHDWTSGLQRLILKKEDEIRAADCCRIQLQLPGKQDKSGRPTFFTAVFN
TFTPAIKESWVNSLQMAKLALEEENHMGWFCVEDDGNHIKKEKHPLLVGHMPVMVAKQQEFKIECAAYNP
EPYLNNESQPDSFSTAHGFLWIGSCTHQMGQIAIVSFQNSTPKVIECFNVESRILCMLYVPVEEKRREPG
APPDPETPAVRASDVPTICVGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTSQSLYAGLVNGA
VASYARAPDGSWDSEPQKVIKLGVLPVRSLLMMEDTLWAASGGQVFIISVETHAVEGQLEAHQEEGMVIS
HMAVSGVGIWIAFTSGSTLRLFHTETLKHLQDINIATPVHNMLPGHQRLSVTSLLVCHGLLMVGTSLGVL
VALPVPRLQGIPKVTGRGMVSYHAHNSPVKFIVLATALHEKDKDKSRDSLAPGPEPQDEDQKDALPSGGA
GSSLSQGDPDAAIWLGDSLGSMTQKSDLSSSSGSLSLSHGSSSLEHRSEDSTIYDLLKDPVSLRSKARRA
KKAKASSALVVCGGQGHRRVHRKARQPHQEELAPTVMVWQIPLLNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH