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Report for CCDS78158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78158.1 Public Homo sapiens 6 SENP6 24 110 108 CCDS HistoryNCBI Gene:26054Re-query CCDS DB by CCDS ID:78158.1Re-query CCDS DB by GeneID:26054See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78158.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327284.12 ENSP00000321820.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000327284.12Link to Ensembl Protein Viewer:ENSP00000321820.8Re-query CCDS DB by Nucleotide ID:ENST00000327284Re-query CCDS DB by Protein ID:ENSP00000321820
Original member Current member NCBI NM_001304792.2 NP_001291721.1 Accepted alive Link to Nucleotide Sequence:NM_001304792.2Link to Protein Sequence:NP_001291721.1Re-query CCDS DB by Nucleotide ID:NM_001304792Re-query CCDS DB by Protein ID:NP_001291721Link to BLAST:NP_001291721.1

Chromosomal Locations for CCDS 78158.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 75602525 75602576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75621532 75621625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75623900 75623960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75633581 75633726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75634707 75634811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75647731 75647801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75659262 75659407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75663221 75663518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75666712 75666941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75670553 75670720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75675435 75675468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75675860 75676054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75677030 75677256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75678583 75678692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 75678811 75678931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGGCGGCCGGCAAGAGCGGCGGTAGCGCAGGGGAGATTACTTTTCTGGAAGCTTTGGCTAGATCAGAGT
CTAAGAGAGATGGAGGTTTTAAAAATAATTGGAGCTTTGATCATGAAGAAGAAAGTGAAGGAGATACAGA
TAAAGATGGGACAAATCTGCTCAGTGTGGATGAAGATGAGGATTCTGAAACCTCAAAAGGAAAAAAGTTA
AATCGTCGATCTGAAATTGTTGCTAATAGCTCTGGTGAATTCATCTTGAAGACATATGTAAGACGAAACA
AGTCTGAAAGTTTTAAAACTTTGAAAGGCAACCCAATTGGACTTAACATGTTGAGCAACAATAAGAAATT
GAGTGAAAATACGCAAAATACGTCATTATGTTCTGGAACTGTAGTTCATGGTAGACGTTTTCATCATGCT
CATGCACAGATACCAGTAGTAAAAACAGCAGCCCAAAGGAAAGAATACCCACCTCATGTCCAAAAAGTTG
AAATTAATCCTGTAAGGTTAAGTCGGCTCCAAGGTGTTGAACGTATAATGAAGAAAACAGAAGAGTCCGA
ATCACAAGTGGAGCCTGAAATTAAGAGGAAAGTACAACAGAAACGACACTGTAGTACCTATCAGCCTACT
CCTCCTCTATCTCCTGCTTCAAAAAAATGTTTAACCCATTTAGAGGATTTGCAAAGAAATTGCAGACAAG
CTATTACTTTGAATGAGTCTACTGGACCATTATTAAGAACGTCAATTCATCAGAATTCTGGAGGACAGAA
GTCACAAAACACAGGATTAACAACCAAGAAGTTTTATGGCAACAATGTGGAAAAGGTTCCAATTGATATT
ATTGTGAATTGTGATGACAGTAAACACACTTATTTACAGACTAATGGAAAAGTCATTTTACCTGGGGCAA
AAATACCCAAAATCACAAACTTGAAAGAAAGGAAAACAAGTTTGTCAGACCTAAATGATCCAATCATTTT
GTCCAGTGATGATGATGATGACAACGACAGAACTAACAGAAGAGAAAGCATATCTCCTCAGCCTGCTGAT
TCAGCATGTTCTTCCCCTGCACCATCCACTGGAAAAGTAGAAGCAGCGCTAAATGAAAATACTTGCAGAG
CAGAGCGTGAACTACGAAGCATTCCAGAAGACTCAGAGTTAAATACAGTTACATTGCCAAGAAAAGCAAG
AATGAAAGACCAGTTTGGCAATTCTATTATCAACACACCTCTGAAACGTCGTAAAGTGTTTTCTCAAGAA
CCTCCAGATGCTTTAGCTTTAAGCTGCCAAAGTTCCTTTGACAGTGTCATTTTAAACTGTCGAAGTATAC
GAGTAGGAACACTCTTCCGGCTGTTAATAGAGCCTGTAATTTTTTGTTTAGATTTTATCAAGATACAGCT
AGACGAACCAGACCATGATCCTGTAGAGATTATATTAAATACCTCTGATCTAACTAAATGTGAATGGTGT
AATGTCCGAAAATTACCTGTAGTGTTTCTTCAAGCAATTCCAGCAGTTTATCAAAAGCTGAGCATCCAAC
TGCAAATGAATAAGGAGGATAAAGTTTGGAATGATTGTAAAGGAGTAAATAAATTAACAAATTTAGAAGA
ACAATATATAATTTTAATTTTTCAAAATGGCCTTGATCCTCCGGCAAATATGGTATTTGAAAGTATCATT
AATGAAATTGGTATAAAGAATAACATCTCCAATTTTTTTGCGAAAATTCCCTTTGAAGAAGCTAATGGCA
GACTTGTTGCCTGTACAAGAACCTATGAAGAGAGCATCAAAGGAAGTTGTGGGCAAAAGGAAAACAAAAT
TAAAACTGTATCATTTGAATCTAAAATACAACTTAGAAGCAAACAAGAATTTCAGTTTTTTGATGAAGAA
GAAGAAACTGGAGAAAACCACACCATCTTCATTGGCCCAGTAGAAAAGTTGATAGTATATCCACCACCTC
CAGCTAAGGGAGGCATCTCTGTTACCAATGAGGACCTGCACTGTCTAAATGAAGGAGAATTTTTAAATGA
TGTTATTATAGACTTTTATTTGAAGTAA

Translation (685 aa):
MAAGKSGGSAGEITFLEALARSESKRDGGFKNNWSFDHEEESEGDTDKDGTNLLSVDEDEDSETSKGKKL
NRRSEIVANSSGEFILKTYVRRNKSESFKTLKGNPIGLNMLSNNKKLSENTQNTSLCSGTVVHGRRFHHA
HAQIPVVKTAAQRKEYPPHVQKVEINPVRLSRLQGVERIMKKTEESESQVEPEIKRKVQQKRHCSTYQPT
PPLSPASKKCLTHLEDLQRNCRQAITLNESTGPLLRTSIHQNSGGQKSQNTGLTTKKFYGNNVEKVPIDI
IVNCDDSKHTYLQTNGKVILPGAKIPKITNLKERKTSLSDLNDPIILSSDDDDDNDRTNRRESISPQPAD
SACSSPAPSTGKVEAALNENTCRAERELRSIPEDSELNTVTLPRKARMKDQFGNSIINTPLKRRKVFSQE
PPDALALSCQSSFDSVILNCRSIRVGTLFRLLIEPVIFCLDFIKIQLDEPDHDPVEIILNTSDLTKCEWC
NVRKLPVVFLQAIPAVYQKLSIQLQMNKEDKVWNDCKGVNKLTNLEEQYIILIFQNGLDPPANMVFESII
NEIGIKNNISNFFAKIPFEEANGRLVACTRTYEESIKGSCGQKENKIKTVSFESKIQLRSKQEFQFFDEE
EETGENHTIFIGPVEKLIVYPPPPAKGGISVTNEDLHCLNEGEFLNDVIIDFYLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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