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Report for CCDS78084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78084.1 Public Homo sapiens 5 SH3PXD2B 24 110 108 CCDS HistoryNCBI Gene:285590Re-query CCDS DB by CCDS ID:78084.1Re-query CCDS DB by GeneID:285590See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78084.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000519643.5 ENSP00000430890.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519643.5Link to Ensembl Protein Viewer:ENSP00000430890.1Re-query CCDS DB by Nucleotide ID:ENST00000519643Re-query CCDS DB by Protein ID:ENSP00000430890
Original member Current member NCBI NM_001308175.2 NP_001295104.1 Accepted alive Link to Nucleotide Sequence:NM_001308175.2Link to Protein Sequence:NP_001295104.1Re-query CCDS DB by Nucleotide ID:NM_001308175Re-query CCDS DB by Protein ID:NP_001295104Link to BLAST:NP_001295104.1

Chromosomal Locations for CCDS 78084.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 172325276 172325380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172346136 172346261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172347283 172347332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172350363 172350589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172353888 172354005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172358773 172358877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172362735 172362869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172373790 172373815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172382036 172382127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172394563 172394639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172406277 172406352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172422416 172422496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172454278 172454352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGCCGCCGCGGCGCAGCATCGTGGAGGTGAAGGTGCTAGACGTGCAGAAGCGGCGGGTGCCCAACAAGC
ATTATGTCTACATCATCCGGGTCACGTGGTCCAGCGGCTCCACCGAGGCCATTTACCGGCGCTACAGCAA
GTTTTTTGACCTCCAGATGCAGATGTTGGACAAATTTCCCATGGAAGGAGGACAGAAGGACCCCAAGCAG
CGGATCATCCCCTTTCTGCCAGGTAAGATTCTCTTCAGACGAAGCCACATCCGGGACGTGGCTGTCAAAC
GCCTGATACCAATTGATGAATACTGTAAGGCCCTCATCCAGCTGCCCCCCTACATCTCTCAGTGTGATGA
GGTGCTGCAGTTCTTTGAGACAAGACCTGAGGACCTGAATCCCCCCAAAGAGGAGCACATTGGGAAAAAG
AAATCTGGGGGTGACCAAACCTCAGTGGACCCCATGGTCCTGGAGCAGTATGTGGTGGTAGCCAACTACC
AGAAGCAGGAGAGTTCGGAGATCAGCCTCAGCGTGGGGCAGGTGGTGGACATCATCGAGAAGAATGAGTC
AGGTTGGTGGTTCGTCAGCACTGCCGAGGAGCAAGGCTGGGTCCCTGCAACGTGCCTCGAAGGCCAGGAT
GGGGTGCAGGATGAGTTTTCTCTGCAGCCTGAAGAAGAGGAGAAGTACACAGTCATCTACCCGTACACAG
CTCGGGACCAGGATGAAATGAACCTGGAGAGAGGGGCTGTGGTGGAGGTCATCCAGAAAAACCTGGAAGG
CTGGTGGAAGATCAGGTACCAGGGCAAAGAAGGCTGGGCCCCCGCCTCCTACCTAAAGAAGAACAGTGGG
GAGCCCTTGCCCCCGAAGCCAGGCCCTGGCTCACCCTCCCACCCGGGTGCCCTTGACTTGGATGGTGTTT
CCCGGCAGCAGAACGCGGTGGGCAGGGAGAAGGAGCTGCTCAGCAGCCAGAGGGACGGGCGGTTTGAAGG
CCGCCCGGTGCCCGACGGTGACGCCAAGCAGAGATCACCAAAGATGAGGCAGAGACCCCCTCCTCGCCGG
GACATGACCATTCCTCGAGGCCTCAACCTGCCGAAGCCGCCCATCCCGCCCCAAGTGGAGGAAGAGTATT
ACACCATCGCCGAATTCCAGACAACCATCCCAGACGGCATCAGCTTCCAGGCAGGCCTGAAGGTCGAGGA
TCATAAGAATGTTCACTTGGAGAGCCCTGTGGAAGTCCCTCTTAGAAGAATCAAGATGCGGACAGCACTT
GGGAAGCACGTGGCAGCTTCCATGGAGATGTGA

Translation (430 aa):
MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSGSTEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQ
RIIPFLPGKILFRRSHIRDVAVKRLIPIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHIGKK
KSGGDQTSVDPMVLEQYVVVANYQKQESSEISLSVGQVVDIIEKNESGWWFVSTAEEQGWVPATCLEGQD
GVQDEFSLQPEEEEKYTVIYPYTARDQDEMNLERGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKKNSG
EPLPPKPGPGSPSHPGALDLDGVSRQQNAVGREKELLSSQRDGRFEGRPVPDGDAKQRSPKMRQRPPPRR
DMTIPRGLNLPKPPIPPQVEEEYYTIAEFQTTIPDGISFQAGLKVEDHKNVHLESPVEVPLRRIKMRTAL
GKHVAASMEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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