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Report for CCDS78077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78077.1 Public Homo sapiens 5 CYFIP2 24 110 108 CCDS HistoryNCBI Gene:26999Re-query CCDS DB by CCDS ID:78077.1Re-query CCDS DB by GeneID:26999See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78077.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616178.4 ENSP00000479719.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616178.4Link to Ensembl Protein Viewer:ENSP00000479719.1Re-query CCDS DB by Nucleotide ID:ENST00000616178Re-query CCDS DB by Protein ID:ENSP00000479719
Original member Current member NCBI NM_001291722.2 NP_001278651.1 Accepted alive Link to Nucleotide Sequence:NM_001291722.2Link to Protein Sequence:NP_001278651.1Re-query CCDS DB by Nucleotide ID:NM_001291722Re-query CCDS DB by Protein ID:NP_001278651Link to BLAST:NP_001278651.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278651.1 1278 Q96F07-1 1278 100% 0 0

Chromosomal Locations for CCDS 78077.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 157285362 157285478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157287019 157287108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157294783 157294860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157296673 157296774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157300715 157300896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157302794 157302890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157304238 157304366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157307761 157307865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157309743 157309834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157311664 157311781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157314344 157314463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157314969 157315094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157319762 157319928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157320655 157320802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157322942 157323016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157323921 157324074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157325482 157325638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157326171 157326267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157327973 157328049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157330742 157330850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157333327 157333446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157339057 157339256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157341070 157341157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157359005 157359148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157360282 157360372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157361468 157361598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157382590 157382662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157383265 157383359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157389189 157389427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157390521 157390668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157392833 157393000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3837 nt):
ATGACCACGCACGTCACCCTGGAAGATGCCCTGTCCAACGTGGACCTGCTTGAAGAGCTTCCCCTCCCCG
ACCAGCAGCCATGCATCGAGCCTCCACCTTCCTCCATCATGTACCAGGCTAACTTTGACACAAACTTTGA
GGACAGGAATGCATTTGTCACGGGCATTGCAAGGTACATTGAGCAGGCTACAGTCCACTCCAGCATGAAT
GAGATGCTGGAGGAAGGACATGAGTATGCGGTCATGCTGTACACCTGGCGCAGCTGTTCCCGGGCCATTC
CCCAGGTGAAATGCAACGAGCAGCCCAACCGAGTAGAGATCTATGAGAAGACAGTAGAGGTGCTGGAGCC
GGAGGTCACCAAGCTCATGAAGTTCATGTATTTTCAGCGCAAGGCCATCGAGCGGTTCTGCAGCGAGGTG
AAGCGGCTGTGCCATGCCGAGCGCAGGAAGGACTTTGTCTCTGAGGCCTACCTCCTGACCCTTGGCAAGT
TCATCAACATGTTTGCTGTCCTGGATGAGCTAAAGAACATGAAGTGCAGCGTCAAGAATGACCACTCTGC
CTACAAGAGGGCAGCACAGTTCCTGCGGAAGATGGCAGATCCCCAGTCTATCCAGGAGTCGCAGAACCTT
TCCATGTTCCTGGCCAACCACAACAGGATCACCCAGTGTCTCCACCAGCAACTTGAAGTGATCCCAGGCT
ATGAGGAGCTGCTGGCTGACATTGTCAACATCTGTGTGGATTACTACGAGAACAAGATGTACCTGACTCC
CAGTGAGAAACATATGCTCCTCAAGGTGATGGGCTTTGGCCTCTACCTAATGGATGGAAATGTCAGTAAC
ATTTACAAACTGGATGCCAAGAAGAGAATTAATCTTAGCAAAATTGATAAATTCTTTAAGCAGCTGCAGG
TGGTGCCCCTTTTCGGCGACATGCAGATAGAGCTGGCCAGATACATTAAGACCAGTGCTCACTATGAAGA
GAACAAGTCCAAGTGGACGTGCACCCAGAGCAGCATCAGCCCCCAGTACAATATCTGCGAGCAGATGGTT
CAGATCCGGGATGACCACATCCGCTTCATCTCCGAGCTCGCTCGCTACAGCAACAGTGAGGTGGTGACGG
GCTCAGGGCTGGACAGCCAGAAGTCAGACGAGGAGTATCGCGAGCTCTTCGACCTAGCCCTGCGGGGTCT
GCAGCTTCTATCCAAGTGGAGCGCCCACGTCATGGAGGTGTACTCTTGGAAGCTGGTTCATCCCACAGAC
AAGTTCTGCAACAAGGACTGTCCTGGCACCGCGGAGGAATATGAGAGAGCCACACGCTACAATTACACCA
GTGAGGAAAAATTTGCCTTCGTTGAGGTGATCGCCATGATCAAAGGCCTGCAGGTGCTCATGGGCAGGAT
GGAGAGCGTCTTCAACCAGGCCATCAGGAACACCATCTACGCGGCATTGCAGGACTTCGCCCAGGTGACG
CTGCGTGAGCCCCTGCGGCAGGCGGTACGGAAGAAGAAGAATGTCCTCATCAGCGTCCTACAGGCAATTC
GAAAGACCATCTGTGACTGGGAGGGAGGGCGAGAGCCCCCTAATGACCCATGCTTGAGAGGGGAGAAGGA
CCCCAAAGGTGGATTTGATATCAAGGTGCCCCGGCGTGCTGTGGGGCCATCCAGCACACAGGCCTGCCAG
TGGTCCCCGAGGGCTTTGTTTCACCCCACTGGTGGCACACAGGGCCGAAGAGGCTGCCGATCCCTGCTGT
ACATGGTGCGGACCATGCTTGAATCACTCATTGCAGACAAAAGCGGCTCCAAGAAGACCCTGAGGAGCAG
CCTGGATGGACCCATTGTCCTCGCCATAGAGGACTTTCACAAACAGTCCTTCTTCTTCACACATCTGCTC
AACATCAGTGAAGCCCTGCAGCAGTGTTGTGACCTCTCCCAGCTCTGGTTCCGAGAATTCTTCCTGGAGT
TAACCATGGGCCGACGAATCCAGTTCCCCATCGAGATGTCCATGCCCTGGATTCTAACGGACCATATCCT
GGAAACCAAAGAACCTTCCATGATGGAGTATGTCCTCTACCCTCTGGATCTGTACAACGACAGCGCCTAC
TATGCTCTGACCAAGTTTAAAAAGCAGTTCCTGTACGATGAGATAGAAGCTGAGGTGAACCTGTGTTTTG
ATCAGTTTGTCTACAAGCTGGCAGACCAGATCTTTGCTTACTACAAAGCCATGGCTGGCAGTGTCCTGTT
GGATAAACGTTTTCGAGCTGAGTGTAAGAATTATGGCGTCATCATTCCGTATCCACCGTCCAATCGCTAT
GAAACACTGCTGAAGCAGAGACACGTCCAGCTGTTGGGTAGATCAATTGACTTGAACAGACTCATTACCC
AGCGCATCTCTGCCGCCATGTATAAATCCTTGGACCAAGCTATCAGCCGCTTTGAGAGTGAGGACCTGAC
CTCCATTGTGGAGCTGGAGTGGCTGCTGGAGATTAACCGGCTCACGCATCGGCTGCTCTGTAAGCATATG
ACGCTGGACAGCTTCGATGCCATGTTCCGAGAGGCCAATCACAATGTGTCCGCCCCCTATGGCCGTATCA
CCCTGCATGTCTTCTGGGAACTGAACTTTGACTTTCTCCCCAACTACTGCTACAATGGGTCCACTAACCG
TTTTGTGCGGACTGCCATTCCTTTCACCCAAGAACCACAACGAGACAAACCTGCCAACGTCCAGCCTTAT
TACCTCTATGGATCCAAGCCTCTCAACATTGCCTACAGCCACATCTACAGCTCCTACAGGAATTTCGTGG
GGCCACCTCATTTCAAGACTATCTGCAGACTCCTGGGTTATCAGGGCATCGCTGTGGTCATGGAGGAACT
GCTAAAGATTGTGAAGAGCTTGCTCCAAGGAACCATTCTCCAGTATGTGAAAACACTGATAGAGGTGATG
CCCAAGATATGCCGCTTGCCCCGACATGAGTATGGCTCCCCAGGGATCCTGGAGTTCTTCCACCACCAGC
TGAAGGACATCATTGAGTACGCAGAGCTCAAAACAGACGTGTTCCAGAGCCTGAGGGAAGTGGGCAATGC
CATCCTCTTCTGCCTCCTCATAGAGCAAGCTCTGTCTCAGGAGGAGGTCTGCGATTTGCTCCATGCCGCA
CCCTTCCAAAACATCTTGCCTAGAGTCTACATCAAAGAGGGGGAGCGCCTGGAGGTCCGGATGAAACGTC
TGGAAGCCAAGTATGCCCCGCTCCACCTGGTCCCTCTGATCGAGCGGCTGGGGACCCCTCAGCAAATCGC
CATTGCTCGCGAGGGTGACCTCCTGACCAAGGAGCGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATC
CTGACCCGCATTCGGAGCTACCTGCAGGACCCCATCTGGCGGGGCCCACCGCCCACCAATGGCGTCATGC
ACGTCGATGAGTGTGTGGAGTTCCACCGGCTGTGGAGCGCCATGCAGTTCGTGTACTGCATCCCTGTGGG
AACCAACGAGTTCACAGCTGAGCAGTGTTTCGGCGATGGCTTGAACTGGGCTGGTTGCTCCATCATTGTC
CTGCTGGGCCAGCAGCGTCGCTTTGACCTGTTCGACTTCTGTTACCACCTGCTAAAAGTGCAGAGGCAGG
ACGGGAAGGATGAAATCATTAAGAATGTGCCCCTGAAGAAGATGGCCGACCGGATCAGGAAGTATCAGAT
CTTGAACAATGAGGTTTTTGCCATCCTGAACAAATACATGAAGTCCGTGGAGACAGACAGTTCCACTGTG
GAGCATGTGCGCTGCTTCCAGCCACCCATCCACCAGTCCTTGGCCACCACTTGCTAA

Translation (1278 aa):
MTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPSSIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMN
EMLEEGHEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVTKLMKFMYFQRKAIERFCSEV
KRLCHAERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNL
SMFLANHNRITQCLHQQLEVIPGYEELLADIVNICVDYYENKMYLTPSEKHMLLKVMGFGLYLMDGNVSN
IYKLDAKKRINLSKIDKFFKQLQVVPLFGDMQIELARYIKTSAHYEENKSKWTCTQSSISPQYNICEQMV
QIRDDHIRFISELARYSNSEVVTGSGLDSQKSDEEYRELFDLALRGLQLLSKWSAHVMEVYSWKLVHPTD
KFCNKDCPGTAEEYERATRYNYTSEEKFAFVEVIAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVT
LREPLRQAVRKKKNVLISVLQAIRKTICDWEGGREPPNDPCLRGEKDPKGGFDIKVPRRAVGPSSTQACQ
WSPRALFHPTGGTQGRRGCRSLLYMVRTMLESLIADKSGSKKTLRSSLDGPIVLAIEDFHKQSFFFTHLL
NISEALQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAY
YALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKAMAGSVLLDKRFRAECKNYGVIIPYPPSNRY
ETLLKQRHVQLLGRSIDLNRLITQRISAAMYKSLDQAISRFESEDLTSIVELEWLLEINRLTHRLLCKHM
TLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPY
YLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVM
PKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVFQSLREVGNAILFCLLIEQALSQEEVCDLLHAA
PFQNILPRVYIKEGERLEVRMKRLEAKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVI
LTRIRSYLQDPIWRGPPPTNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIV
LLGQQRRFDLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSSTV
EHVRCFQPPIHQSLATTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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