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Report for CCDS78060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78060.1 Public Homo sapiens 5 ZCCHC10 24 110 108 CCDS HistoryNCBI Gene:54819Re-query CCDS DB by CCDS ID:78060.1Re-query CCDS DB by GeneID:54819See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78060.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355372.6 ENSP00000347533.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355372.6Link to Ensembl Protein Viewer:ENSP00000347533.2Re-query CCDS DB by Nucleotide ID:ENST00000355372Re-query CCDS DB by Protein ID:ENSP00000347533
Original member Current member NCBI NM_001300817.3 NP_001287746.1 Accepted alive Link to Nucleotide Sequence:NM_001300817.3Link to Protein Sequence:NP_001287746.1Re-query CCDS DB by Nucleotide ID:NM_001300817Re-query CCDS DB by Protein ID:NP_001287746Link to BLAST:NP_001287746.1

Chromosomal Locations for CCDS 78060.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 132998583 132998832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133000132 133000173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133006759 133006920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133022841 133022906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133026497 133026537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGCGACTCCCATGCATCGGCTAATAGCCCGGAGACAAGCATTCGACACAGAGTTGCAGCCTGTCAAGA
CCTTTTGGATCCTGATTCAGCCATCCATCGTTATTAGTGAAGCAAATAAGCAACATGTAAGATGTCAGAA
ATGCTTGGAATTTGGACATTGGACTTATGAATGCACAGGAAAAAGAAAATACCTACATAGGCCCTCAAGG
ACAGCAGAACTAAAGAAAGCTTTAAAAGAAAAAGAAAACAGATTATTATTGCAACAAAGCATTGGAGAAA
CCAATGTAGAAAGAAAGGCCAAGAAAAAAAGTTCCAGTAGCAGTAGCAGTGACAGTTCTGCCAGTGATTC
TTCATCAGAGAGTGAAGAAACATCTACCTCTTCCTCCTCAGAGGACAGTGACACTGATGAAAGCTCCTCT
AGTTCCTCATCCTCAGCCTCCTCCACAACCTCTTCCTCCTCCTCTGATTCAGACTCAGATTCCAGCTCTT
CCAGTAGCAGTAGCACCAGCACAGATAGCAGCTCTGACGATGAACCACCAAAGAAGAAGAAAAAGAAATA
G

Translation (186 aa):
MATPMHRLIARRQAFDTELQPVKTFWILIQPSIVISEANKQHVRCQKCLEFGHWTYECTGKRKYLHRPSR
TAELKKALKEKENRLLLQQSIGETNVERKAKKKSSSSSSSDSSASDSSSESEETSTSSSSEDSDTDESSS
SSSSSASSTTSSSSSDSDSDSSSSSSSSTSTDSSSDDEPPKKKKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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