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Report for CCDS78054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78054.1 Public Homo sapiens 5 SNCAIP 24 110 108 CCDS HistoryNCBI Gene:9627Re-query CCDS DB by CCDS ID:78054.1Re-query CCDS DB by GeneID:9627See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78054.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261367.11 ENSP00000261367.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261367.11Link to Ensembl Protein Viewer:ENSP00000261367.7Re-query CCDS DB by Nucleotide ID:ENST00000261367Re-query CCDS DB by Protein ID:ENSP00000261367
Original member Current member NCBI NM_001308100.2 NP_001295029.1 Accepted alive Link to Nucleotide Sequence:NM_001308100.2Link to Protein Sequence:NP_001295029.1Re-query CCDS DB by Nucleotide ID:NM_001308100Re-query CCDS DB by Protein ID:NP_001295029Link to BLAST:NP_001295029.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295029.1 1016 Q9Y6H5-3 1016 100% 0 0

Chromosomal Locations for CCDS 78054.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122391135 122391191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122400986 122401126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122403793 122403865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122422868 122423739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122425352 122425531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122431969 122432082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122440629 122440754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122444563 122444732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122449845 122449937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122450533 122451601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122452925 122452995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122463491 122463575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3051 nt):
ATGGAAGCCCCTGAATACCTTGATTTGGATGAAATTGACTTTAGTGATGACATATCTGACAATAGGAGTC
AAGGGAACAGGCTACAAAAGCTTGGATTGGAGGACACAGACAGGGAAGATGCAATGGGCTTTGGTTCCCA
TAGGGCCAAACTGACAGTAGTTGCTGCCCTGGGAGCTTGCCATTGTCCTGAGAATGAGTATTCAGTCACA
TCACTCAAGACGATCCCAGAACTGTGCCGAAGATGTGATACGCAAAACGAAGACAGATCAGTTTCTAGCT
CTAGCTGGAATTGTGGCATCTCAACTCTTATTACAAACACGCAAAAGCCCACAGGAATCGCTGATGTGTA
CAGTAAGTTCCGCCCAGTGAAGCGGGTTTCGCCACTGAAACATCAGCCAGAGACTCTGGAGAACAATGAA
AGTGATGACCAAAAGAACCAGAAAGTGGTTGAGTACCAGAAAGGGGGTGAGTCTGACCTGGGCCCCCAGC
CTCAGGAGCTTGGCCCTGGAGATGGAGTGGGCGGCCCACCAGGTAAGAGCTCTGAGCCCAGCACATCGCT
GGGTGAACTGGAGCACTACGACCTCGACATGGATGAGATTCTGGATGTGCCTTATATTAAATCCAGTCAG
CAGCTTGCCTCTTTTACCAAGGTGACTTCAGAAAAAAGAATTTTGGGCTTATGCACAACCATCAATGGCC
TTTCTGGCAAAGCCTGCTCTACAGGAAGTTCTGAGAGCTCATCATCCAACATGGCACCATTTTGTGTTCT
TTCTCCCGTGAAAAGCCCTCACTTGAGAAAAGCATCAGCTGTCATCCACGACCAGCACAAGCTGTCCACT
GAAGAAACCGAGATCTCACCTCCTCTGGTTAAATGTGGCTCTGCATATGAGCCTGAAAACCAGAGTAAAG
ACTTCCTAAACAAGACATTTAGTGATCCTCATGGTCGAAAAGTTGAGAAGACAACACCAGACTGCCAGCT
CAGGGCCTTCCACCTACAATCCTCAGCAGCAGAATCCAAACCAGAAGAGCAGGTCAGTGGCCTAAACCGG
ACCAGCTCCCAAGGCCCAGAAGAAAGGAGTGAGTATCTGAAAAAAGTGAAAAGCATCTTGAACATTGTTA
AAGAAGGACAGATCTCTCTCCTGCCACACCTAGCTGCAGACAATCTAGACAAAATTCACGACGAAAATGG
AAACAATCTATTACATATTGCGGCGTCACAGGGACACGCAGAGTGTCTACAGCACCTCACTTCTTTGATG
GGAGAAGACTGCCTCAATGAGCGCAACACTGAGAAGTTGACTCCAGCAGGCCTGGCCATTAAGAATGGTC
AGTTGGAGTGCGTACGCTGGATGGTGAGCGAAACAGAAGCCATTGCAGAACTGAGTTGTTCTAAGGATTT
TCCAAGCCTTATTCATTACGCAGGTTGCTATGGCCAGGAAAAGATTCTTCTGTGGCTTCTTCAGTTTATG
CAAGAACAGGGCATCTCGTTGGATGAAGTAGACCAGGATGGCAACAGTGCCGTTCACGTAGCCTCACAGC
ATGGCTACCTTGGATGCATACAGACCTTGGTTGAATATGGAGCAAATGTCACCATGCAGAACCACGCTGG
GGAAAAGCCCTCCCAGAGCGCCGAGCGGCAGGGGCACACCCTGTGCTCCAGGTACCTGGTGGTGGTGGAG
ACCTGCATGTCGCTGGCCTCTCAAGTGGTGAAGTTAACCAAGCAGCTAAAGGAACAAACAGTAGAACGTG
TCACGCTGCAGAACCAACTCCAACAATTTCTAGAAGCCCAGAAATCAGAGGGCAAGTCACTCCCTTCTTC
ACCCAGTTCACCATCCTCACCTGCCTCCAGAAAGTCCCAGTGGAAATCTCCAGATGCAGATGATGATTCT
GTAGCCAAAAGCAAGCCAGGAGTCCAAGAGGGGATTCAGGTTCTTGGAAGCCTGTCAGCCTCCAGCCGGG
CTAGACCCAAAGCAAAAGATGAAGATTCTGATAAAATCTTACGCCAGTTATTGGGAAAGGAAATCTCAGA
AAATGTCTGCACCCAGGAAAAACTGTCCTTGGAATTCCAGGATGCTCAGGCTTCCTCTAGAAATTCTAAA
AAGATCCCACTGGAGAAGAGGGAACTGAAGTTAGCCAGGCTGAGACAGCTGATGCAGAGGTCACTGAGTG
AGTCTGACACAGACTCCAACAACTCTGAGGACCCCAAGACTACCCCAGTGAGGAAGGCTGACCGACCAAG
GCCGCAGCCCATTGTAGAAAGCGTAGAGAGTATGGACAGCGCAGAAAGCCTGCACCTGATGATTAAGAAA
CACACCTTGGCATCAGGGGGACGCAGGTTTCCTTTCAGCATCAAGGCCTCCAAATCCCTGGATGGCCACA
GCCCATCTCCCACCTCAGAGAGCAGCGAACCAGACTTAGAATCCCAGTATCCAGGCTCAGGGAGTATTCC
TCCAAACCAGCCCTCTGGTGACCCTCAGCAGCCCAGCCCTGACAGTACTGCTGCCCAGAAAGTTGCCACA
AGTCCCAAGAGTGCCCTCAAGTCTCCATCTTCCAAGCGTAGGACATCTCAGAACTTAAAACTGAGAGTTA
CCTTTGAGGAGCCTGTGGTGCAGATGGAGCAGCCTAGCCTTGAACTGAATGGAGAAAAAGACAAAGATAA
GGGCAGGACTCTCCAGCGGACCTCCACAAGTAACGAATCGGGGGATCAACTGAAAAGGCCTTTTGGAGCC
TTTCGATCTATCATGGAGACACTAAGTGGCAACCAAAACAATAATAATAACTACCAGGCAGCCAACCAGC
TGAAAACCTCTACATTGCCCTTGACCTCACTTGGGAGGAAGACAGATGCCAAGGGAAACCCTGCCAGCTC
CGCTAGCAAAGGAAAGAATAAGGCAGAAATGTACAGCAGCTGCATCAATCTTTCCTCTAACATGCTGATT
GAAGAGCATCTGTGTAACGACACACGGCATAATGACATCAATAGAAAAATGAAGAAATCCTACAGCATAA
AGCACATTGCTGAGCCAGAGTCAAAAGAACTCTTCTTGTAA

Translation (1016 aa):
MEAPEYLDLDEIDFSDDISDNRSQGNRLQKLGLEDTDREDAMGFGSHRAKLTVVAALGACHCPENEYSVT
SLKTIPELCRRCDTQNEDRSVSSSSWNCGISTLITNTQKPTGIADVYSKFRPVKRVSPLKHQPETLENNE
SDDQKNQKVVEYQKGGESDLGPQPQELGPGDGVGGPPGKSSEPSTSLGELEHYDLDMDEILDVPYIKSSQ
QLASFTKVTSEKRILGLCTTINGLSGKACSTGSSESSSSNMAPFCVLSPVKSPHLRKASAVIHDQHKLST
EETEISPPLVKCGSAYEPENQSKDFLNKTFSDPHGRKVEKTTPDCQLRAFHLQSSAAESKPEEQVSGLNR
TSSQGPEERSEYLKKVKSILNIVKEGQISLLPHLAADNLDKIHDENGNNLLHIAASQGHAECLQHLTSLM
GEDCLNERNTEKLTPAGLAIKNGQLECVRWMVSETEAIAELSCSKDFPSLIHYAGCYGQEKILLWLLQFM
QEQGISLDEVDQDGNSAVHVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSAERQGHTLCSRYLVVVE
TCMSLASQVVKLTKQLKEQTVERVTLQNQLQQFLEAQKSEGKSLPSSPSSPSSPASRKSQWKSPDADDDS
VAKSKPGVQEGIQVLGSLSASSRARPKAKDEDSDKILRQLLGKEISENVCTQEKLSLEFQDAQASSRNSK
KIPLEKRELKLARLRQLMQRSLSESDTDSNNSEDPKTTPVRKADRPRPQPIVESVESMDSAESLHLMIKK
HTLASGGRRFPFSIKASKSLDGHSPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVAT
SPKSALKSPSSKRRTSQNLKLRVTFEEPVVQMEQPSLELNGEKDKDKGRTLQRTSTSNESGDQLKRPFGA
FRSIMETLSGNQNNNNNYQAANQLKTSTLPLTSLGRKTDAKGNPASSASKGKNKAEMYSSCINLSSNMLI
EEHLCNDTRHNDINRKMKKSYSIKHIAEPESKELFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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