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Report for CCDS78011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78011.1 Public Homo sapiens 5 MIER3 24 110 108 CCDS HistoryNCBI Gene:166968Re-query CCDS DB by CCDS ID:78011.1Re-query CCDS DB by GeneID:166968See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78011.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381226.7 ENSP00000370624.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381226.7Link to Ensembl Protein Viewer:ENSP00000370624.3Re-query CCDS DB by Nucleotide ID:ENST00000381226Re-query CCDS DB by Protein ID:ENSP00000370624
Original member Current member NCBI NM_001297598.2 NP_001284527.1 Accepted alive Link to Nucleotide Sequence:NM_001297598.2Link to Protein Sequence:NP_001284527.1Re-query CCDS DB by Nucleotide ID:NM_001297598Re-query CCDS DB by Protein ID:NP_001284527Link to BLAST:NP_001284527.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284527.1 555 Q7Z3K6-2 555 100% 0 0

Chromosomal Locations for CCDS 78011.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 56923128 56923585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56923691 56923833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56923915 56924042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56928767 56928861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56930664 56930745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56933247 56933398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56935428 56935500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56935666 56935751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56937578 56937698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56938883 56939017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56946926 56947086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56950628 56950652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56952094 56952102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGCGGAGGCTTCTTTTGGAAGTTCGAGCCCAGTTTGTTTTATTCCAGTTGGGTCTTTGTCTTCTGAGG
ATCATGATTTTGACCCCACTGCTGAGATGTTGGTCCATGACTATGATGATGAAAGAACTCTTGAAGAAGA
GGAAATGATGGATGAGGGTAAAAACTTCAGTTCAGAAATTGAAGACTTAGAAAAGGAAGGAACCATGCCT
CTAGAAGATTTACTGGCATTCTATGGCTATGAACCTACAATTCCAGCAGTTGCAAATTCCAGTGCAAATA
GTTCCCCAAGTGAACTGGCAGATGAACTACCAGACATGACACTAGACAAAGAGGAAATAGCAAAAGACCT
GTTGTCAGGTGATGACGAGGAAACTCAGTCTTCTGCGGATGATCTGACGCCATCTGTGACTTCCCATGAA
ACTTCTGATTTCTTCCCTAGGCCTTTACGATCAAATACTGCATGTGATGGTGATAAGGAATCAGAGGTTG
AAGATGTTGAAACAGACAGTGGTAATTCACCTGAAGATTTGAGGAAGGAAATAATGATTGGTTTACAATA
TCAGGCAGAGATTCCCCCTTATCTTGGAGAGTACGATGGTAATGAGAAAGTATATGAAAACGAAGACCAG
TTACTTTGGTGTCCTGATGTGGTTTTGGAGAGCAAAGTTAAGGAATACCTTGTTGAGACTTCATTAAGGA
CTGGCAGTGAAAAAATAATGGATAGGATTTCTGCAGGAACACACACAAGGGACAATGAACAGGCATTATA
TGAACTTCTCAAGTGTAACCACAATATAAAGGAAGCAATCGAAAGATACTGCTGCAATGGAAAGGCCTCT
CAAGAAGGAATGACTGCATGGACGGAAGAAGAATGCCGAAGCTTTGAACATGCACTCATGCTTTTTGGAA
AAGATTTTCATCTTATACAGAAGAATAAGGTGAGAACTAGGACAGTTGCTGAGTGTGTAGCATTCTACTA
TATGTGGAAGAAATCTGAACGTTATGATTACTTTGCTCAACAGACAAGATTTGGGAAAAAAAGATATAAC
CATCACCCTGGAGTTACGGACTATATGGATCGTTTAGTAGATGAAACAGAAGCTTTGGGTGGGACGGTAA
ATGCTTCAGCCTTAACTTCTAACCGGCCTGAGCCTATTCCTGATCAACAGCTAAACATTCTCAACTCCTT
CACTGCCAGTGACTTGACAGCTTTGACCAACAGTGTAGCAACCGTCTGCGACCCCACAGATGTGAATTGT
TTGGATGATAGCTTTCCTCCACTGGGCAACACACCCCGTGGACAAGTTAATCATGTGCCTGTTGTAACAG
AAGAGTTACTCACCCTGCCCAGCAATGGGGAAAGTGATTGTTTTAATTTATTTGAGACTGGATTTTATCA
CTCGGAGCTAAACCCTATGAACATGTGCAGTGAAGAGTCAGAGAGACCAGCAAAAAGATTGAAAATGGGC
ATTGCCGTCCCTGAATCCTTTATGAATGAAGTTTCTGTAAATAACCTGGGTGTGGACTTTGAAAATCACA
CACATCACATCACCAGTGCCAAAATGGCTGTTTCTGTGGCTGACTTTGGCAGTCTCTCTGCCAACGAGAC
CAATGGTTTCATCAGTGCCCATGCTCTGCATCAGCACGCGGCCCTACACTCTGAGTGA

Translation (555 aa):
MAEASFGSSSPVCFIPVGSLSSEDHDFDPTAEMLVHDYDDERTLEEEEMMDEGKNFSSEIEDLEKEGTMP
LEDLLAFYGYEPTIPAVANSSANSSPSELADELPDMTLDKEEIAKDLLSGDDEETQSSADDLTPSVTSHE
TSDFFPRPLRSNTACDGDKESEVEDVETDSGNSPEDLRKEIMIGLQYQAEIPPYLGEYDGNEKVYENEDQ
LLWCPDVVLESKVKEYLVETSLRTGSEKIMDRISAGTHTRDNEQALYELLKCNHNIKEAIERYCCNGKAS
QEGMTAWTEEECRSFEHALMLFGKDFHLIQKNKVRTRTVAECVAFYYMWKKSERYDYFAQQTRFGKKRYN
HHPGVTDYMDRLVDETEALGGTVNASALTSNRPEPIPDQQLNILNSFTASDLTALTNSVATVCDPTDVNC
LDDSFPPLGNTPRGQVNHVPVVTEELLTLPSNGESDCFNLFETGFYHSELNPMNMCSEESERPAKRLKMG
IAVPESFMNEVSVNNLGVDFENHTHHITSAKMAVSVADFGSLSANETNGFISAHALHQHAALHSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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