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Report for CCDS7799.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7799.2 Public Homo sapiens 11 ZNF143 24 110 108 CCDS HistoryNCBI Gene:7702Re-query CCDS DB by CCDS ID:7799.2Re-query CCDS DB by GeneID:7702See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7799.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396602.7 ENSP00000379847.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396602.7Link to Ensembl Protein Viewer:ENSP00000379847.2Re-query CCDS DB by Nucleotide ID:ENST00000396602Re-query CCDS DB by Protein ID:ENSP00000379847
Original member Current member NCBI NM_003442.6 NP_003433.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003442.6Link to Protein Sequence:NP_003433.3Re-query CCDS DB by Nucleotide ID:NM_003442Re-query CCDS DB by Protein ID:NP_003433Link to BLAST:NP_003433.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003433.3 638 P52747-1 638 100% 0 0

Chromosomal Locations for CCDS 7799.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 9471309 9471420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9472677 9472769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9473941 9474024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9474550 9474633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9478390 9478586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9479472 9479546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9494646 9494765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9496303 9496378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9497675 9497800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9501091 9501270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9508619 9508846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9512448 9512596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9516201 9516362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9525240 9525386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9527530 9527613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGTTGTTAGCCCAAATAAATCGAGATTCTCAGGGAATGACAGAGTTTCCTGGAGGAGGGATGGAGGCGC
AACATGTTACGCTGTGCTTGACAGAGGCAGTCACCGTGGCAGATGGTGACAACTTAGAAAATATGGAAGG
CGTAAGCTTGCAAGCAGTAACACTTGCAGATGGTTCTACTGCTTACATACAACACAATTCTAAAGATGCA
AAACTCATAGATGGCCAGGTCATTCAGTTGGAAGATGGTTCTGCGGCCTATGTTCAACATGTACCCATAC
CTAAAAGTACAGGGGACAGTTTGCGTCTAGAGGATGGTCAAGCAGTACAGTTAGAAGATGGTACCACAGC
ATTTATTCACCACACCTCCAAAGATAGTTATGACCAGAGTGCATTACAGGCGGTTCAGCTGGAAGATGGT
ACCACAGCTTATATCCACCATGCAGTGCAAGTCCCGCAGTCTGACACCATCTTGGCAATTCAGGCTGATG
GGACAGTGGCAGGTCTGCACACTGGGGATGCTACAATTGACCCTGACACCATCAGTGCTTTGGAACAGTA
TGCAGCAAAGGTGTCCATTGATGGAAGTGAAAGTGTAGCAGGTACTGGAATGATTGGAGAAAATGAGCAA
GAGAAAAAAATGCAGATTGTTTTACAAGGACATGCTACAAGAGTAACTGCTAAATCTCAACAGAGTGGAG
AGAAGGCATTTCGATGTGAATATGATGGATGTGGAAAATTATATACAACAGCTCATCATCTCAAGGTCCA
TGAGAGGTCACACACAGGAGATCGGCCTTATCAGTGTGAGCATGCAGGCTGTGGGAAGGCATTTGCAACA
GGTTATGGATTAAAAAGTCACGTCAGAACTCATACAGGAGAAAAGCCATATCGGTGTTCGGAAGATAATT
GTACTAAATCTTTCAAAACTTCAGGAGATCTACAGAAACACATCAGAACTCATACAGGAGAAAGGCCCTT
TAAGTGTCCCTTCGAAGGCTGCGGTCGGTCCTTTACAACATCAAATATCAGAAAAGTGCACGTTAGGACA
CACACAGGAGAAAGACCTTATTACTGCACAGAGCCAGGATGTGGGAGGGCATTTGCCAGTGCAACAAATT
ATAAAAACCATGTGAGGATACACACAGGAGAAAAGCCATATGTTTGTACAGTTCCTGGGTGTGACAAAAG
GTTTACAGAATATTCCAGTTTGTACAAACATCATGTTGTCCACACTCATTCCAAACCTTACAACTGTAAC
CACTGTGGGAAGACATACAAGCAGATCTCCACGCTGGCCATGCACAAACGGACAGCCCACAACGACACTG
AGCCCATCGAGGAGGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTCAAGGTGAAGATGTTCTTAAAGG
GTCCCAGATTACGTATGTTACAGGTGTAGAAGGGGACGACGTTGTTTCTACACAAGTAGCCACAGTAACC
CAATCTGGACTGAGTCAACAAGTTACACTCATATCCCAGGATGGGACTCAGCATGTCAACATATCTCAAG
CTGACATGCAGGCCATTGGCAACACCATCACAATGGTAACGCAGGATGGCACGCCCATCACAGTCCCCGC
CCATGATGCAGTCATCTCCTCAGCAGGAACGCACTCTGTTGCTATGGTTACTGCTGAGGGTACAGAAGGG
GAACAGGTTGCAATTGTAGCTCAAGACTTGGCAGCATTCCATACTGCCTCATCAGAAATGGGGCACCAGC
AGCATAGCCATCACTTAGTAACCACAGAAACCAGACCTCTGACCTTAGTAGCAACATCCAATGGCACCCA
GATTGCAGTTCAGCTTGGAGAACAGCCATCTCTGGAAGAAGCCATCAGAATAGCGTCTAGAATCCAACAA
GGAGAAACGCCAGGGTTGGATGATTAA

Translation (638 aa):
MLLAQINRDSQGMTEFPGGGMEAQHVTLCLTEAVTVADGDNLENMEGVSLQAVTLADGSTAYIQHNSKDA
KLIDGQVIQLEDGSAAYVQHVPIPKSTGDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSALQAVQLEDG
TTAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSESVAGTGMIGENEQ
EKKMQIVLQGHATRVTAKSQQSGEKAFRCEYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHAGCGKAFAT
GYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPFEGCGRSFTTSNIRKVHVRT
HTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCN
HCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQGEDVLKGSQITYVTGVEGDDVVSTQVATVT
QSGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPAHDAVISSAGTHSVAMVTAEGTEG
EQVAIVAQDLAAFHTASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQ
GETPGLDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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