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Report for CCDS77937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77937.1 Public Homo sapiens 4 KLHL8 24 110 108 CCDS HistoryNCBI Gene:57563Re-query CCDS DB by CCDS ID:77937.1Re-query CCDS DB by GeneID:57563See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77937.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000498875.6 ENSP00000426451.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000498875.6Link to Ensembl Protein Viewer:ENSP00000426451.1Re-query CCDS DB by Nucleotide ID:ENST00000498875Re-query CCDS DB by Protein ID:ENSP00000426451
Original member Current member NCBI NM_001292006.2 NP_001278935.1 Accepted alive Link to Nucleotide Sequence:NM_001292006.2Link to Protein Sequence:NP_001278935.1Re-query CCDS DB by Nucleotide ID:NM_001292006Re-query CCDS DB by Protein ID:NP_001278935Link to BLAST:NP_001278935.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278935.1 544 Q9P2G9-2 544 100% 0 0

Chromosomal Locations for CCDS 77937.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 87163519 87163642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87163878 87164079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87170079 87170238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87170447 87170615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87176757 87176868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87178477 87178620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87183203 87183389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87185251 87185571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87195324 87195539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGGCTTCAGATTCTATGAGTAGTAAACAAGCTAGGAATCACATTACAAAGGGGAAAAGGCAACAACAGC
ACCAGCAAATAAAGAACAGATCCTCAATTAGTGATGGTGATGGAGAAGATTCCTTTATTTTTGAAGCAAA
TGAAGCTTGGAAAGATTTTCATGGTTCTCTTCTTCGATTTTATGAAAATGGAGAACTCTGTGATGTCACA
CTCAAGGTTGAACTGGTGGCTAGAGCTTGTTGTGAATACATGAAGTTACATTTTCATCCCTCCAATTGCC
TGGCAGTAAGAGCCTTTGCAGAAAGTCACAATCGAATAGACTTAATGGACATGGCGGATCAGTATGCCTG
TGACCATTTTACTGAAGTAGTGGAGTGTGAAGACTTTGTAAGTGTATCACCGCAGCACCTCCATAAGCTT
TTGTCCTCCAGTGATCTAAATATTGAAAATGAAAAGCAGGTCTATAATGCTGCCATCAAGTGGCTTCTTG
CCAATCCTCAGCATCATTCCAAATGGTTGGATGAAACACTTGCACAGGTTCGCCTGCCATTGTTGCCGGT
TGATTTTCTTATGGGTGTTGTGGCAAAAGAACAGATTGTCAAGCAAAATCTAAAATGTAGAGATTTACTG
GATGAAGCAAGAAATTACCACCTTCACTTGAGTAGCAGAGCAGTACCTGACTTTGAATACTCCATTCGGA
CTACCCCAAGGAAGCATACTGCTGGTGTGCTGTTTTGTGTAGGTGGTCGAGGTGGATCTGGTGACCCCTT
TCGCAGTATTGAATGCTATTCTATCAACAAAAACAGTTGGTTCTTTGGACCAGAAATGAATAGTCGAAGG
CGACATGTGGGTGTAATCTCTGTGGAAGGTAAAGTGTATGCAGTAGGTGGACATGATGGAAATGAACATT
TAGGGAGTATGGAGATGTTTGATCCTCTCACTAATAAATGGATGATGAAGGCATCAATGAACACAAAGAG
GCGAGGAATTGCCTTGGCTTCCTTAGGAGGCCCAATTTATGCAATTGGAGGGTTAGATGACAATACTTGC
TTCAATGATGTGGAGAGATATGACATAGAATCTGATCAGTGGAGTACAGTGGCACCAATGAATACTCCCC
GTGGAGGAGTTGGCTCTGTTGCTCTAGTAAACCATGTTTATGCAGTAGGTGGCAATGATGGAATGGCTTC
TTTATCTAGCGTGGAGAGATATGATCCACATCTGGATAAGTGGATAGAAGTTAAAGAAATGGGTCAGCGA
AGAGCAGGCAATGGAGTTAGCAAGCTTCATGGTTGCTTATACGTAGTTGGTGGTTTTGATGATAATTCTC
CTCTGAGTTCAGTTGAGCGGTATGACCCCCGAAGCAACAAGTGGGATTATGTGGCAGCACTTACTACTCC
CAGAGGTGGAGTGGGAATCGCAACAGTGATGGGCAAAATCTTTGCAGTTGGTGGTCATAATGGCAATGCA
TACTTAAATACAGTAGAAGCGTTTGATCCAGTGCTGAATAGGTGGGAGCTTGTTGGATCTGTGTCTCACT
GCAGAGCTGGAGCAGGAGTAGCTGTGTGTTCCTGTTTAACTAGCCAAATTCGAGATGTAGGTCATGGATC
CAATAATGTGGTTGACTGTATGTGA

Translation (544 aa):
MASDSMSSKQARNHITKGKRQQQHQQIKNRSSISDGDGEDSFIFEANEAWKDFHGSLLRFYENGELCDVT
LKVELVARACCEYMKLHFHPSNCLAVRAFAESHNRIDLMDMADQYACDHFTEVVECEDFVSVSPQHLHKL
LSSSDLNIENEKQVYNAAIKWLLANPQHHSKWLDETLAQVRLPLLPVDFLMGVVAKEQIVKQNLKCRDLL
DEARNYHLHLSSRAVPDFEYSIRTTPRKHTAGVLFCVGGRGGSGDPFRSIECYSINKNSWFFGPEMNSRR
RHVGVISVEGKVYAVGGHDGNEHLGSMEMFDPLTNKWMMKASMNTKRRGIALASLGGPIYAIGGLDDNTC
FNDVERYDIESDQWSTVAPMNTPRGGVGSVALVNHVYAVGGNDGMASLSSVERYDPHLDKWIEVKEMGQR
RAGNGVSKLHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIATVMGKIFAVGGHNGNA
YLNTVEAFDPVLNRWELVGSVSHCRAGAGVAVCSCLTSQIRDVGHGSNNVVDCM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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