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Report for CCDS77931.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77931.1 Public Homo sapiens 4 SEPTIN11 24 110 108 CCDS HistoryNCBI Gene:55752Re-query CCDS DB by CCDS ID:77931.1Re-query CCDS DB by GeneID:55752See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77931.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000510515.5 ENSP00000422896.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510515.5Link to Ensembl Protein Viewer:ENSP00000422896.1Re-query CCDS DB by Nucleotide ID:ENST00000510515Re-query CCDS DB by Protein ID:ENSP00000422896
Original member Current member NCBI NM_001306147.2 NP_001293076.1 Accepted alive Link to Nucleotide Sequence:NM_001306147.2Link to Protein Sequence:NP_001293076.1Re-query CCDS DB by Nucleotide ID:NM_001306147Re-query CCDS DB by Protein ID:NP_001293076Link to BLAST:NP_001293076.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293076.1 439 Q9NVA2-2 439 100% 0 0

Chromosomal Locations for CCDS 77931.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 76995882 76995938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76996425 76996539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77005601 77005796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77011735 77011921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77014856 77015017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77019165 77019261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77020502 77020670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77028629 77028761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77030783 77030970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77034497 77034512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGGAGGAGAGGAAACCAGCTCATGTGCTGAGAAGTTTTAAATATGCTGCATTTATGAATGAAGAGCTTC
GAAACTTGTCTTTGTCTGGCCATGTGGGATTTGACAGCCTCCCTGACCAGCTGGTCAACAAGTCTACTTC
TCAAGGATTCTGTTTCAACATCCTTTGTGTTGGTGAGACAGGCATTGGCAAATCCACGTTAATGGACACT
TTGTTCAACACCAAATTTGAAAGTGACCCAGCTACTCACAATGAACCAGGTGTTCGGTTAAAAGCCAGAA
GTTATGAGCTTCAGGAAAGCAATGTACGGCTGAAGTTAACCATTGTTGACACCGTGGGATTTGGAGACCA
GATAAATAAAGATGACAGCTATAAGCCGATAGTAGAATATATTGATGCCCAGTTCGAGGCCTACCTGCAA
GAGGAATTGAAGATTAAACGTTCTCTCTTCAACTACCATGACACGAGGATCCATGCCTGCCTCTACTTTA
TTGCCCCTACTGGACATTCACTAAAGTCCCTGGATCTGGTCACCATGAAAAAGCTGGACAGTAAGGTGAA
CATCATTCCAATAATTGCAAAAGCTGACACCATTGCCAAGAATGAACTGCACAAATTCAAGAGTAAGATC
ATGAGTGAACTGGTCAGCAATGGGGTCCAGATATATCAGTTTCCCACTGATGAAGAAACGGTGGCAGAGA
TTAACGCAACAATGAGTGTCCATCTCCCATTTGCAGTGGTTGGCAGCACCGAAGAGGTGAAGATTGGCAA
CAAGATGGCAAAGGCCAGGCAGTACCCCTGGGGTGTGGTGCAGGTTGAGAATGAAAATCATTGCGATTTT
GTGAAACTTCGAGAGATGCTGATCCGCGTGAACATGGAGGACTTGCGAGAGCAGACTCACACCCGCCACT
ATGAATTGTACCGACGCTGTAAGCTTGAAGAGATGGGGTTCAAGGACACTGACCCTGACAGCAAACCCTT
CAGTCTTCAGGAGACATATGAAGCAAAAAGGAATGAATTCCTGGGAGAACTGCAGAAGAAAGAAGAAGAA
ATGAGACAAATGTTTGTTATGAGAGTGAAGGAGAAAGAAGCTGAACTTAAGGAGGCAGAGAAAGAGCTTC
ACGAGAAGTTTGACCTTCTAAAGCGGACACACCAAGAAGAAAAGAAGAAAGTGGAAGACAAGAAGAAGGA
GCTTGAGGAGGAGGTGAACAACTTCCAGAAGAAGAAAGCAGCGGCTCAGTTACTACAGTCCCAGGCCCAG
CAATCTGGGGCCCAGCAAACCAAGAAAGACAAGGATAAGAAAAATGCAAGCTTCACATAA

Translation (439 aa):
MEERKPAHVLRSFKYAAFMNEELRNLSLSGHVGFDSLPDQLVNKSTSQGFCFNILCVGETGIGKSTLMDT
LFNTKFESDPATHNEPGVRLKARSYELQESNVRLKLTIVDTVGFGDQINKDDSYKPIVEYIDAQFEAYLQ
EELKIKRSLFNYHDTRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTIAKNELHKFKSKI
MSELVSNGVQIYQFPTDEETVAEINATMSVHLPFAVVGSTEEVKIGNKMAKARQYPWGVVQVENENHCDF
VKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEE
MRQMFVMRVKEKEAELKEAEKELHEKFDLLKRTHQEEKKKVEDKKKELEEEVNNFQKKKAAAQLLQSQAQ
QSGAQQTKKDKDKKNASFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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