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Report for CCDS77883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77883.1 Public Homo sapiens 4 SLC49A3 24 110 108 CCDS HistoryNCBI Gene:84179Re-query CCDS DB by CCDS ID:77883.1Re-query CCDS DB by GeneID:84179See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77883.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347950.9 ENSP00000307545.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347950.9Link to Ensembl Protein Viewer:ENSP00000307545.5Re-query CCDS DB by Nucleotide ID:ENST00000347950Re-query CCDS DB by Protein ID:ENSP00000307545
Original member Current member NCBI NM_001294342.2 NP_001281271.1 Accepted alive Link to Nucleotide Sequence:NM_001294342.2Link to Protein Sequence:NP_001281271.1Re-query CCDS DB by Nucleotide ID:NM_001294342Re-query CCDS DB by Protein ID:NP_001281271Link to BLAST:NP_001281271.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001281271.1 441 Q6UXD7-3 441 100% 0 0

Chromosomal Locations for CCDS 77883.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 681958 682376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 682781 682890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 683210 683367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 683609 683761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 684483 684602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 684719 684856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 686532 686624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 688993 689127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGGCGGGGCCGACGGAGGCCGAGACGGGGTTGGCCGAGCCCCGGGCCCTGTGCGCGCAGCGGGGCCACC
GCACCTACGCGCGCCGCTGGGTGTTCCTGCTCGCGATCAGCCTGCTCAACTGCTCCAACGCCACGATCAA
CTGGCTGTCACTGGTCTACCTCGTGGTATCCACCCCATTTGGCGTGGCGGCCATCTGGATCCTGGACTCC
GTCGGGCTCCGTGCGGCGCTCGGTGTCTATACCATCCCTGCTGGCGTCGTCTGCCTGCTGTCCACCATCT
GCCTGTGGGAGAGTGTGCCCCCCACCCCGCCCTCTGCCGGGGCTGCCAGCTCCACCTCAGAGAAGTTCCT
GGATGGGCTCAAGCTGCAGCTCATGTGGAACAAGGCCTATGTCATCCTGGCTGTGTGCTTGGGGGGAATG
ATCGGGATCTCTGCCAGCTTCTCAGCCCTCCTGGAGCAGATCCTCTGTGCAAGCGGCCACTCCAGTGGGT
TTTCCGGCCTCTGTGGCGCTCTCTTCATCACGTTTGGGATCCTGGGGGCACTGGCTCTCGGCCCCTATGT
GGACCGGACCAAGCACTTCACTGAGGCCACCAAGATTGGCCTGTGCCTGTTCTCTCTGGCCTGCGTGCCC
TTTGCCCTGGTGTCCCAGCTGCAGGGACAGACCCTTGCCCTGGCTGCCACCTGCTCGCTGCTCGGGCTGT
TTGGCTTCTCGGTGGGCCCCGTGGCCATGGAGTTGGCGGTCGAGTGTTCCTTCCCCGTGGGGGAGGGGGC
TGCCACAGGCATGATCTTTGTGCTGGGGCAGGCCGAGGGAATACTCATCATGCTGGCAATGACGGCACTG
ACTGTGCGACGCTCGGAGCCGTCCTTGTCCACCTGCCAGCAGGGGGAGGATCCACTTGACTGGACAGTGT
CTCTGCTGCTGATGGCCGGCCTGTGCACCTTCTTCAGCTGCATCCTGGCGGTCTTCTTCCACACCCCATA
CCGGCGCCTGCAGGCCGAGTCTGGGGAGCCCCCCTCCACCCGTAACGCCGTGGGCGGCGCAGACTCAGGG
CCGGGTGTGGACCGAGGGGGAGCAGGAAGGGCTGGGGTCCTGGGGCCCAGCACGGCGACTCCGGAGTGCA
CGGCGAGGGGGGCCTCGCTAGAGGACCCCAGAGGGCCCGGGAGCCCCCACCCAGCCTGCCACCGAGCGAC
TCCCCGTGCGCAAGGCCCAGCAGCCACCGACGCGCCCTCCCGCCCCGGCAGACTCGCAGGCAGGGTCCAA
GCGTCCAGGTTTATTGACCCGGCTGGGTCTCACTCCTCCTTCTCCTCCCCGTGGGTGATCACGTAG

Translation (441 aa):
MAGPTEAETGLAEPRALCAQRGHRTYARRWVFLLAISLLNCSNATINWLSLVYLVVSTPFGVAAIWILDS
VGLRAALGVYTIPAGVVCLLSTICLWESVPPTPPSAGAASSTSEKFLDGLKLQLMWNKAYVILAVCLGGM
IGISASFSALLEQILCASGHSSGFSGLCGALFITFGILGALALGPYVDRTKHFTEATKIGLCLFSLACVP
FALVSQLQGQTLALAATCSLLGLFGFSVGPVAMELAVECSFPVGEGAATGMIFVLGQAEGILIMLAMTAL
TVRRSEPSLSTCQQGEDPLDWTVSLLLMAGLCTFFSCILAVFFHTPYRRLQAESGEPPSTRNAVGGADSG
PGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHPACHRATPRAQGPAATDAPSRPGRLAGRVQ
ASRFIDPAGSHSSFSSPWVIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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