NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS77771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77771.1 Public Homo sapiens 3 PDZRN3 24 110 108 CCDS HistoryNCBI Gene:23024Re-query CCDS DB by CCDS ID:77771.1Re-query CCDS DB by GeneID:23024See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77771.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000479530.5 ENSP00000418624.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000479530.5Link to Ensembl Protein Viewer:ENSP00000418624.1Re-query CCDS DB by Nucleotide ID:ENST00000479530Re-query CCDS DB by Protein ID:ENSP00000418624
Original member Current member NCBI NM_001303142.2 NP_001290071.1 Accepted alive Link to Nucleotide Sequence:NM_001303142.2Link to Protein Sequence:NP_001290071.1Re-query CCDS DB by Nucleotide ID:NM_001303142Re-query CCDS DB by Protein ID:NP_001290071Link to BLAST:NP_001290071.1

Chromosomal Locations for CCDS 77771.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 73383365 73384930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73385669 73385785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73387968 73388069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73389816 73389878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73391018 73391116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73400922 73401009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73404148 73404395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73433639 73433707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2352 nt):
ATGGGATGCAGTCTGTGCAGCCTGCAGAAGCAAGAGGAGCAGTACAAATTACTCTATGAAGTTTGTCAGG
TCAACGGCAGAGACTTATCCAGAGCAACTCATGACCAGGCTGTGGAAGCTTTCAAGACAGCCAAGGAGCC
CATAGTGGTGCAGGTGTTGAGAAGAACACCAAGGACCAAAATGTTCACGCCTCCATCAGAGTCTCAGCTG
GTGGACACGGGAACCCAAACCGACATCACCTTTGAACATATCATGGCCCTCACTAAGATGTCCTCTCCCA
GCCCACCCGTGCTGGATCCCTATCTCTTGCCAGAGGAGCATCCCTCAGCCCATGAATACTACGATCCAAA
TGACTACATTGGAGACATCCATCAGGAGATGGACAGGGAGGAGCTGGAGCTGGAGGAAGTGGACCTCTAC
AGAATGAACAGCCAGGACAAGCTGGGCCTCACTGTGTGCTACCGGACGGACGATGAAGACGACATTGGGA
TTTATATCAGTGAGATTGACCCTAACAGCATTGCAGCCAAGGATGGGCGCATCCGAGAAGGAGACCGCAT
TATCCAGATTAATGGGATAGAGGTGCAGAACCGTGAAGAGGCTGTGGCTCTTCTAACCAGTGAAGAAAAT
AAAAACTTTTCATTGCTGATTGCAAGGCCTGAACTCCAGCTGGATGAGGGCTGGATGGATGATGACAGGA
ACGACTTTCTGGATGACCTGCACATGGACATGCTGGAGGAGCAGCACCACCAGGCCATGCAATTCACAGC
TAGCGTGCTGCAGCAGAAGAAGCACGACGAAGACGGTGGGACCACAGATACAGCCACCATCTTGTCCAAC
CAGCACGAGAAGGACAGCGGTGTGGGGCGGACCGACGAGAGCACCCGTAATGACGAGAGCTCGGAGCAAG
AGAACAATGGCGACGACGCCACCGCATCCTCCAACCCGCTGGCGGGGCAGAGGAAGCTCACCTGCAGCCA
GGACACCTTGGGCAGCGGCGACCTGCCCTTCAGCAACGAGTCTTTCATTTCGGCCGACTGCACGGACGCC
GACTACCTGGGGATCCCGGTGGACGAGTGCGAGCGCTTCCGCGAGCTCCTGGAGCTCAAGTGCCAGGTGA
AGAGCGCCACCCCTTACGGCCTGTACTACCCTAGCGGCCCCCTGGACGCCGGCAAGAGTGACCCTGAGAG
CGTGGACAAGGAGCTGGAGCTGCTGAACGAAGAGCTGCGCAGCATCGAGCTGGAGTGCCTGAGCATCGTG
CGCGCCCACAAGATGCAGCAGCTCAAGGAGCAGTACCGCGAGTCCTGGATGCTGCACAACAGCGGCTTCC
GCAACTACAACACCAGCATCGACGTGCGCAGACACGAGCTCTCAGATATCACCGAGCTCCCGGAGAAATC
CGACAAGGACAGCTCGAGCGCCTACAACACAGGCGAGAGCTGCCGCAGCACCCCGCTCACCCTGGAGATC
TCCCCCGACAACTCCTTGAGGAGAGCGGCGGAGGGCATCAGCTGCCCGAGCAGCGAAGGGGCTGTGGGGA
CCACGGAAGCCTACGGGCCAGCCTCCAAGAATCTGCTCTCCATCACGGAAGATCCCGAAGTGGGCACCCC
TACCTATAGCCCGTCCCTGAAGGAGCTGGACCCCAACCAGCCCCTGGAAAGCAAAGAGCGGAGAGCCAGC
GACGGGAGCCGGAGCCCCACGCCCAGCCAGAAGCTGGGCAGCGCCTACCTGCCCTCCTATCACCACTCCC
CATACAAGCACGCGCACATCCCGGCGCACGCCCAGCACTACCAGAGCTACATGCAGCTGATCCAGCAGAA
GTCGGCCGTGGAGTACGCGCAAAGCCAGATGAGCCTGGTGAGCATGTGCAAGGACCTGAGCTCTCCCACC
CCGTCGGAGCCGCGCATGGAGTGGAAGGTGAAGATCCGCAGCGACGGGACGCGCTACATCACCAAGAGGC
CCGTGCGGGACCGCCTGCTGCGGGAGCGCGCCCTGAAGATCCGGGAAGAGCGCAGCGGCATGACCACCGA
CGACGACGCGGTGAGCGAGATGAAGATGGGGCGCTACTGGAGCAAGGAGGAGAGGAAGCAGCACCTGGTG
AAGGCCAAGGAGCAGCGGCGGCGGCGCGAGTTCATGATGCAGAGCAGGTTGGATTGTCTCAAGGAGCAGC
AAGCAGCCGATGACAGGAAGGAGATGAACATTCTCGAACTGAGCCACAAAAAGATGATGAAGAAGAGGAA
TAAGAAAATCTTCGATAACTGGATGACGATCCAAGAACTCTTAACCCACGGCACAAAATCCCCGGACGGC
ACTAGAGTATACAATTCCTTCCTATCGGTGACTACTGTATAA

Translation (783 aa):
MGCSLCSLQKQEEQYKLLYEVCQVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPPSESQL
VDTGTQTDITFEHIMALTKMSSPSPPVLDPYLLPEEHPSAHEYYDPNDYIGDIHQEMDREELELEEVDLY
RMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEEN
KNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASVLQQKKHDEDGGTTDTATILSN
QHEKDSGVGRTDESTRNDESSEQENNGDDATASSNPLAGQRKLTCSQDTLGSGDLPFSNESFISADCTDA
DYLGIPVDECERFRELLELKCQVKSATPYGLYYPSGPLDAGKSDPESVDKELELLNEELRSIELECLSIV
RAHKMQQLKEQYRESWMLHNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEI
SPDNSLRRAAEGISCPSSEGAVGTTEAYGPASKNLLSITEDPEVGTPTYSPSLKELDPNQPLESKERRAS
DGSRSPTPSQKLGSAYLPSYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCKDLSSPT
PSEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGMTTDDDAVSEMKMGRYWSKEERKQHLV
KAKEQRRRREFMMQSRLDCLKEQQAADDRKEMNILELSHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDG
TRVYNSFLSVTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH