NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS77325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77325.1 Public Homo sapiens 19 TMEM143 24 110 108 CCDS HistoryNCBI Gene:55260Re-query CCDS DB by CCDS ID:77325.1Re-query CCDS DB by GeneID:55260See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77325.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377431.6 ENSP00000366649.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377431.6Link to Ensembl Protein Viewer:ENSP00000366649.1Re-query CCDS DB by Nucleotide ID:ENST00000377431Re-query CCDS DB by Protein ID:ENSP00000366649
Original member Current member NCBI NM_001303540.2 NP_001290469.1 Accepted alive Link to Nucleotide Sequence:NM_001303540.2Link to Protein Sequence:NP_001290469.1Re-query CCDS DB by Nucleotide ID:NM_001303540Re-query CCDS DB by Protein ID:NP_001290469Link to BLAST:NP_001290469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290469.1 359 Q96AN5-2 359 100% 0 0

Chromosomal Locations for CCDS 77325.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48333219 48333433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48334008 48334197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48342530 48342809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48343321 48343451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48363291 48363531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48363898 48363920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGACAGTCGAGCTTTGGCTAAGGCTCCGGGGAAAGGGTCTAGCCATGCTGCATGTGACCCGGGGGGTCT
GGGGGTCCAGGGTCCGAGTATGGCCACTGTTGCCCGCGCTCCTCGGGCCCCCCCGGGCCCTCTCATCGCT
GGCAGCCAAAATGGGGGAGTATCGCAAGATGTGGAACCCCAGGGAGCCCCGCGACTGGGCCCAGCAGTAC
CGCGAGCGCTTCATTCCCTTCTCCAAGGAGCAGCTGCTCCGCCTCCTAATACAGGTGACAGTAAATTTGG
ATCAGTATGTCTACATTCACTTCTGGGCCCTGGGCCAGCGAGTCGGGCAGATGCCCCTGAAGTCCAGCGT
GGGCTCCAGGCGTGGCTTCTTCACCAAGCTGCCCCCTGCGGAGAGGAGATACTTTAAGCGGGTGGTCCTG
GCAGCCCGGACCAAACGGGGACACCTGGTACTGAAGAGTTTCAAGGACACGCCGCTGGAAGGCCTGGAGC
AGCTGCTGCCGGAGCTGAAGGTGCGCACGCCCACCCTGCAGCGCGCCCTGCTCAACCTCATGCTGGTAGT
CTCCGGCGTGGCGATCTTCGTCAACGTGGGCATGGTGGTGCTAACCGACCTCAAGGTGGCCACCTCCCTG
CTGCTGCTGCTCTTCGCCATCTTCATGGGCCTGCGGGCCTCCAAGATGTTCGGGCAGCGGCGCAGCGCGC
AGGCGTTGGAGCTGGCGCACATGCTGTACTATCGCAGTACGTCCAACAACTCGGAGCTGCTCAGCGCCCT
GGCCCTGCGCGCGCAGGACGAGCACACCAAGGAGGCGCTGCTGGCTCACAGCTTCCTGGCCCGGCGGCCA
GGGGGCACTCAAGGCTCGCCCGAAGAGACCTCCAGGTGGCTCCGGTCGGAGGTGGAGAACTGGCTCCTAG
CCAAGTCAGGCTGTGAGGTGACCTTCAACGGAACTCGGGCCCTGGCGCATCTGCAGGCCCTGACCCCCAG
CATGGGATTGTACCCACCCCCGGGTTTCCCCAAACTAGACCCAGTGGCTCCGATCACTTCCGAGCCCCCG
CAAGCCACGCCCAGCAGTAACATCTCCTGA

Translation (359 aa):
MTVELWLRLRGKGLAMLHVTRGVWGSRVRVWPLLPALLGPPRALSSLAAKMGEYRKMWNPREPRDWAQQY
RERFIPFSKEQLLRLLIQVTVNLDQYVYIHFWALGQRVGQMPLKSSVGSRRGFFTKLPPAERRYFKRVVL
AARTKRGHLVLKSFKDTPLEGLEQLLPELKVRTPTLQRALLNLMLVVSGVAIFVNVGMVVLTDLKVATSL
LLLLFAIFMGLRASKMFGQRRSAQALELAHMLYYRSTSNNSELLSALALRAQDEHTKEALLAHSFLARRP
GGTQGSPEETSRWLRSEVENWLLAKSGCEVTFNGTRALAHLQALTPSMGLYPPPGFPKLDPVAPITSEPP
QATPSSNIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH