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Report for CCDS77297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77297.1 Public Homo sapiens 19 ZNF546 24 110 108 CCDS HistoryNCBI Gene:339327Re-query CCDS DB by CCDS ID:77297.1Re-query CCDS DB by GeneID:339327See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77297.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000600094.5 ENSP00000469540.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600094.5Link to Ensembl Protein Viewer:ENSP00000469540.1Re-query CCDS DB by Nucleotide ID:ENST00000600094Re-query CCDS DB by Protein ID:ENSP00000469540
Original member Current member NCBI NM_001297763.2 NP_001284692.1 Accepted alive Link to Nucleotide Sequence:NM_001297763.2Link to Protein Sequence:NP_001284692.1Re-query CCDS DB by Nucleotide ID:NM_001297763Re-query CCDS DB by Protein ID:NP_001284692Link to BLAST:NP_001284692.1

Chromosomal Locations for CCDS 77297.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 39998327 39998332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40006096 40006182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40007274 40007400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40008470 40008565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40013665 40015781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2433 nt):
ATGCAGCCCCGGTTTCTCTGGATTCTGTGCTTCTCCATGGAGGAAACTCAAGGAGAACTGACAAGTTCTT
GT
GGTTCTAAAACCATGGCCAATGTATCTTTGGCATTTAGGGATGTGTCCATAGACCTCTCCCAAGAGGA
G
TGGGAGTGCCTGGACGCTGTGCAGAGGGACTTGTACAAGGATGTGATGTTGGAGAACTACAGCAACCTG
GTC
TCACTGGGATATACCATTCCTAAGCCAGATGTGATTACTTTATTGGAGCAAGAGAAAGAGCCCTGGA
TA
GTAATGAGGGAAGGGACAAGGAATTGGTTCACAGATTTGGAATACAAGTATATTACCAAGAATTTGCT
T
TCAGAAAAGAATGTTTGCAAAATCTATTTATCTCAATTGCAGACAGGGGAAAAAAGTAAAAACACCATC
CAT
GAGGACACCATTTTCAGAAATGGTTTGCAGTGTAAACATGAATTTGAGAGACAAGAGAGACATCAGA
TG
GGATGCGTTAGTCAAATGCTAATCCAAAAACAAATATCTCATCCTCTACATCCAAAAATTCATGCTAG
A
GAGAAATCATATGAATGTAAGGAATGTAGAAAGGCCTTTAGACAACAGTCATACCTTATTCAACATCTG
AGA
ATTCACACTGGTGAGAGACCCTATAAATGTATGGAATGTGGAAAGGCCTTTTGTCGAGTGGGAGACC
TT
AGAGTACATCACACAATCCATGCTGGGGAGAGACCCTATGAATGTAAAGAATGTGGGAAGGCCTTTAG
A
CTTCATTATCACCTTACTGAACATCAGAGAATACATTCTGGTGTGAAACCCTACGAGTGTAAGGAATGT
GGG
AAAGCCTTTAGTCGTGTTAGAGACCTTAGAGTACATCAGACAATTCATGCTGGAGAGAGACCTTATG
AA
TGTAAAGAATGTGGGAAGGCCTTTAGACTTCATTATCAACTAACTGAACATCAAAGAATTCATACTGG
T
GAGAGGCCTTATGAATGTAAGGTTTGTGGCAAGACCTTTAGGGTACAACGACATATTAGTCAACATCAG
AAA
ATTCATACTGGTGTCAAACCCTATAAATGTAATGAATGTGGGAAGGCCTTTAGTCATGGCTCATACC
TT
GTTCAACATCAGAAAATTCATACTGGTGAAAAACCCTACGAATGTAAAGAATGTGGTAAGTCCTTTAG
T
TTTCATGCAGAACTTGCTCGACATCGTAGAATTCATACTGGTGAGAAACCCTATGAATGTAGAGAATGT
GGA
AAAGCCTTTCGTCTTCAAACGGAACTTACTCGGCATCATAGAACTCATACTGGTGAGAAACCCTATG
AA
TGTAAGGAATGTGGGAAGGCCTTTATTTGTGGTTATCAACTTACTTTACATCTGAGAACTCACACCGG
T
GAGATTCCCTATGAATGTAAGGAATGTGGAAAAACCTTCAGTAGTCGCTATCATCTCACTCAACACTAC
AGA
ATTCATACTGGTGAGAAACCCTACATATGTAACGAATGTGGAAAAGCCTTTCGTCTTCAAGGAGAAC
TT
ACCCGACATCACAGAATTCATACATGTGAGAAACCCTATGAATGTAAGGAATGTGGGAAGGCTTTTAT
T
CATAGCAATCAATTTATTTCACACCAGCGAATTCACACCAGTGAGAGCACCTACATATGTAAAGAATGT
GGG
AAGATTTTTAGTCGTCGCTATAATCTTACTCAACATTTTAAAATTCATACTGGTGAAAAACCCTACA
TA
TGTAATGAATGTGGGAAAGCCTTTCGATTTCAAACAGAACTTACTCAGCATCACAGAATTCATACTGG
T
GAAAAACCCTATAAATGTACAGAATGTGGGAAGGCCTTTATTCGTAGCACTCATCTCACGCAACATCAC
AGA
ATTCATACTGGTGAGAAACCCTACGAATGTACGGAATGTGGGAAGACGTTTAGTCGGCACTATCATC
TT
ACTCAACATCACAGAGGCCATACTGGTGAGAAGCCCTACATATGTAATGAATGTGGGAATGCTTTTAT
T
TGCAGTTATCGACTTACATTACATCAAAGAATTCACACTGGTGAGCTTCCATATGAATGTAAGGAATGT
GGA
AAGACCTTTAGTCGTCGGTATCATCTTACTCAACATTTTAGACTTCATACTGGTGAGAAACCTTATA
GC
TGTAAAGAATGTGGGAATGCCTTTCGTCTTCAAGCAGAACTTACTCGACATCACATAGTTCACACGGG
T
GAGAAACCCTATAAATGTAAAGAATGTGGGAAAGCCTTCAGTGTTAATTCAGAACTTACTCGACATCAC
AGA
ATTCATACTGGTGAAAAACCCTATCAATGTAAAGAATGTGGAAAAGCCTTTATTCGTAGTGATCAAC
TT
ACTTTACATCAGAGAAATCATATTAGTGAGGAAGTCCTATGCATAATGTAA


Translation (810 aa):
MQPRFLWILCFSMEETQGELTSSCGSKTMANVSLAFRDVSIDLSQEEWECLDAVQRDLYKDVMLENYSNL
V
SL
GYTIPKPDVITLLEQEKEPWIVMREGTRNWFTDLEYKYITKNLLSEKNVCKIYLSQLQTGEKSKNTI
H
EDTIFRNGLQCKHEFERQERHQMGCVSQMLIQKQISHPLHPKIHAREKSYECKECRKAFRQQSYLIQHL
R
IHTGERPYKCMECGKAFCRVGDLRVHHTIHAGERPYECKECGKAFRLHYHLTEHQRIHSGVKPYECKEC
G
KAFSRVRDLRVHQTIHAGERPYECKECGKAFRLHYQLTEHQRIHTGERPYECKVCGKTFRVQRHISQHQ
K
IHTGVKPYKCNECGKAFSHGSYLVQHQKIHTGEKPYECKECGKSFSFHAELARHRRIHTGEKPYECREC
G
KAFRLQTELTRHHRTHTGEKPYECKECGKAFICGYQLTLHLRTHTGEIPYECKECGKTFSSRYHLTQHY
R
IHTGEKPYICNECGKAFRLQGELTRHHRIHTCEKPYECKECGKAFIHSNQFISHQRIHTSESTYICKEC
G
KIFSRRYNLTQHFKIHTGEKPYICNECGKAFRFQTELTQHHRIHTGEKPYKCTECGKAFIRSTHLTQHH
R
IHTGEKPYECTECGKTFSRHYHLTQHHRGHTGEKPYICNECGNAFICSYRLTLHQRIHTGELPYECKEC
G
KTFSRRYHLTQHFRLHTGEKPYSCKECGNAFRLQAELTRHHIVHTGEKPYKCKECGKAFSVNSELTRHH
R
IHTGEKPYQCKECGKAFIRSDQLTLHQRNHISEEVLCIM




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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