NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS77178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77178.1 Public Homo sapiens 18 RPRD1A 24 110 108 CCDS HistoryNCBI Gene:55197Re-query CCDS DB by CCDS ID:77178.1Re-query CCDS DB by GeneID:55197See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000588737.5 ENSP00000465444.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588737.5Link to Ensembl Protein Viewer:ENSP00000465444.1Re-query CCDS DB by Nucleotide ID:ENST00000588737Re-query CCDS DB by Protein ID:ENSP00000465444
Original member Current member EBI ENST00000590898.5 ENSP00000467991.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000590898.5Link to Ensembl Protein Viewer:ENSP00000467991.1Re-query CCDS DB by Nucleotide ID:ENST00000590898Re-query CCDS DB by Protein ID:ENSP00000467991
Original member Current member NCBI NM_001303411.2 NP_001290340.1 Accepted alive Link to Nucleotide Sequence:NM_001303411.2Link to Protein Sequence:NP_001290340.1Re-query CCDS DB by Nucleotide ID:NM_001303411Re-query CCDS DB by Protein ID:NP_001290340Link to BLAST:NP_001290340.1
Original member Current member NCBI NM_001303412.2 NP_001290341.1 Accepted alive Link to Nucleotide Sequence:NM_001303412.2Link to Protein Sequence:NP_001290341.1Re-query CCDS DB by Nucleotide ID:NM_001303412Re-query CCDS DB by Protein ID:NP_001290341Link to BLAST:NP_001290341.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290340.1 276 Q96P16-3 276 100% 0 0
NP_001290341.1 276 Q96P16-3 276 100% 0 0

Chromosomal Locations for CCDS 77178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35993151 35993300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36026900 36027075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36027184 36027310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36030808 36030905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36030991 36031097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36033708 36033837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36040807 36040849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGAGAAATTCCAATTGGAGATTTTGTCAAACAGGAATTTACTCCAAACCAAACAGGAAGCTTACTTTTC
TCTACCTAGCCAATGATGTCATACAGAACAGCAAGAGGAAGGGGCCAGAGTTTACAAAAGATTTTGCACC
AGTTATAGTGGAGGCTTTTAAGCATGTTTCAAGTGAAACTGATGAAAGTTGTAAGAAGCACCTTGGAAGA
GTGTTATCTATTTGGGAAGAAAGGTCTGTTTATGAAAATGATGTATTAGAACAACTTAAACAAGCTCTGT
ATGGTGATAAGAAGCCTAGGAAGCGAACTTATGAACAGATAAAGGTGGATGAAAATGAAAACTGTTCCTC
TCTGGGATCTCCAAGTGAACCACCACAGACTCTAGATCTCGTTAGAGCATTACAAGATCTGGAAAATGCA
GCCTCAGGTGATGCAGCAGTTCATCAGAGGATAGCTTCTTTACCTGTTGAAGTCCAAGAAGTATCTCTAT
TAGATAAAATAACAGATAAAGAATCTGGAGAAAGGCTTTCCAAAATGGTAGAGGATGCGTGTATGTTGCT
GGCAGATTACAATGGCAGATTGGCGGCAGAAATAGATGATAGAAAGCAACTCACTCGAATGTTAGCAGAT
TTTCTTCGTTGTCAAAAGGAAGCCCTTGCAGAGAAAGAGCATAAATTGGAAGAGTACAAGCGCAAGCTAG
CCAGAGTTTCCCTGGTGCGCAAAGAACTCAGGTCCCGGATCCAGAGCCTGCCAGACTTATCTCGATTGCC
CAATGTCACTGGCAGCCACATGCACCTGCCCTTTGCGGGAGACATCTACAGTGAAGATTGA

Translation (276 aa):
MRNSNWRFCQTGIYSKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGR
VLSIWEERSVYENDVLEQLKQALYGDKKPRKRTYEQIKVDENENCSSLGSPSEPPQTLDLVRALQDLENA
ASGDAAVHQRIASLPVEVQEVSLLDKITDKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLAD
FLRCQKEALAEKEHKLEEYKRKLARVSLVRKELRSRIQSLPDLSRLPNVTGSHMHLPFAGDIYSED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH