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Report for CCDS7701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7701.1 Public Homo sapiens 11 LMNTD2 24 110 108 CCDS HistoryNCBI Gene:256329Re-query CCDS DB by CCDS ID:7701.1Re-query CCDS DB by GeneID:256329See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7701.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329451.8 ENSP00000331167.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329451.8Link to Ensembl Protein Viewer:ENSP00000331167.3Re-query CCDS DB by Nucleotide ID:ENST00000329451Re-query CCDS DB by Protein ID:ENSP00000331167
Original member Current member NCBI NM_173573.3 NP_775844.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173573.3Link to Protein Sequence:NP_775844.2Re-query CCDS DB by Nucleotide ID:NM_173573Re-query CCDS DB by Protein ID:NP_775844Link to BLAST:NP_775844.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775844.2 634 Q8IXW0 634 100% 0 0

Chromosomal Locations for CCDS 7701.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 554980 555111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 555305 555503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 555734 555930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 555996 556115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 556192 556375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 556492 556588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 556835 557097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 557399 557487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 557572 557640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 557884 558039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 558161 558248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 558614 558766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 558856 558979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 560683 560716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGCGGTGGCTGCGGCCCGCGGGCAGGCGTCGGGAGCAAGAGTCGGTCAGTGGTCACCTGGGACCTCCAG
CAGGCGCACCTGCAGCCCCCGAGACTCCCACGTGCCTGCCAGACACCACGCCCCACCCCGCACCGGTGGT
CTGCTCTGCCGACCCGCAGTTGGCTCTTGAGTCCCTGGACCCTCGCACACTGCGGCTGCTGTGGAGACAG
CGAGAACTGGAGATCCAGGCCTTGCGGTGGGCCATCCAGAATGGCGAGGACGCCCGGCTCTGCCACATCC
TGGAAGAGGTGGCGGGGCTTCCGCCCAAGAGGAGCTCCCACAGTCAGGAGAAACTCCTGCAGAACCAGGT
CCAGAAGCTGATCCAGGAGTTGAAGGAACAGAAGGAGCGAGCCCAGTGGGAGAAGGAGCACCTGGAGGAG
CGGCTGCTGCAGACCACCCGCACGCTCCAGGAGATGGAGGCCGAGCTGCAGAACTTGCAGAAGTCCTGCC
TCCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCGCATGCTACGATCCCAGACTGGCAGTGTGGAGGTAGT
GACGGCAGAGACTCTGATGGACCCAAGCGACCTCTCTGAAAACATTCAGGCCCCCACCGGGGAGGGCTTT
CGGCTGGAGGACGTGGATTGGAACAGCGTTGCCCGCCGGTATCCCAACCTCTTCACCAACATGGAGCCCA
GCTCAAAGCAAAAGCAGCCCCGGCCCTGGCCACAGCTGGACACAGGGAGCCCAGAGTCCTCTGGAAAGCA
TTCCGAGCGGCATCACAAGACCGTGGAGTGGGGCTCCCTGCCCTGTCTGAACACCAGCAGCTCAGGGGGC
GCTGACTCCGACTCCAGCAGCTGCCGGCCGGGCCTGCCTTCCTTCGTGCAGGTGATAGGGCACCCGCCCC
GGGACCACCGCGCTTCCTCCGAGCAAGCGCTGGTGCAGGCCGGCAGCTACAGCAGGGACTCAGAAGATCT
CCAGAAAACCCACTCACCCAGGCACGGCGAGCCGGTCCTGTCGCCCCAGCCCTGCACAGACCCGGACCAC
TGGAGCCCGGAACTCCTGCAGAGCCCGACAGGCCTGAAGATCGTGGCTGTGAGCTGCCGGGAGAAGTTCG
TCCGCATCTTCAACCCGTCGCAGGAGAGCACGGCCGACCTGAGCGGCATGGTGCTGAAGCAGCTGGTGCG
CGGCTTCCCGGAGCGCCTGTACCGCTTCCCGCCGGGCACGCTGCTGGCCCCGCGGCACCACGTCACGGTC
TGGGGCGAGGCGACCCGCAGCGCCAAGAAGCCGCTGCGCGCGTCCTCGAGCCGGGAGCCCGTTCCCCTCC
TCTCCATCCGCGGCTGCGCGACGCTGCTCCTGAGCCCCAAGGGCGAGGTCCTCAGTGAGCACCGGATCCC
ACGCCGCGAGACTCCGGCCCCGAGGGTCTTCGCCGACGGCACCGACTTGTCCATCGACCGCTTCCCGCTC
CCTGAGGCCGGGCCCGGCGCCGACACCCGCAAGCCGCCGCGCCCACCTCGACCCCTGCGCAAAGGCCGGG
TGCGGGAGCCCCGGGTCAGTCGCCGGAGACCAGGGACGCGGGGCCTGCTGCCCCCAGTGAGCTCGGGGAA
GCTCTTCCACGCGCGGGAGGGGCCTGCGCGGCCCGAGAACCCCGAGATCCCCGCGCCGCAGCACCTGCCC
GCCATCCCGGGTGACCCCACCCTGCCGTCGCCTCCCGCAGAGGCCGGGCTGGGCCTGGAGGACTGTCGGC
TCCAGAAAGAACACCGAGTTCGGGTGTGCCGGAAGAGCGTGGACCGTAGCTGCCCCCTGGTGGCCCTGTC
GGTGCAGAACACGGCGGAGAGCAGATTCGGCTTCCGCTTCCTCAGCTGCCTGCCGGTCACCGCGGACACC
TGCCGCGGCGCCTAG

Translation (634 aa):
MRWLRPAGRRREQESVSGHLGPPAGAPAAPETPTCLPDTTPHPAPVVCSADPQLALESLDPRTLRLLWRQ
RELEIQALRWAIQNGEDARLCHILEEVAGLPPKRSSHSQEKLLQNQVQKLIQELKEQKERAQWEKEHLEE
RLLQTTRTLQEMEAELQNLQKSCLLQLARSSWVGRMLRSQTGSVEVVTAETLMDPSDLSENIQAPTGEGF
RLEDVDWNSVARRYPNLFTNMEPSSKQKQPRPWPQLDTGSPESSGKHSERHHKTVEWGSLPCLNTSSSGG
ADSDSSSCRPGLPSFVQVIGHPPRDHRASSEQALVQAGSYSRDSEDLQKTHSPRHGEPVLSPQPCTDPDH
WSPELLQSPTGLKIVAVSCREKFVRIFNPSQESTADLSGMVLKQLVRGFPERLYRFPPGTLLAPRHHVTV
WGEATRSAKKPLRASSSREPVPLLSIRGCATLLLSPKGEVLSEHRIPRRETPAPRVFADGTDLSIDRFPL
PEAGPGADTRKPPRPPRPLRKGRVREPRVSRRRPGTRGLLPPVSSGKLFHAREGPARPENPEIPAPQHLP
AIPGDPTLPSPPAEAGLGLEDCRLQKEHRVRVCRKSVDRSCPLVALSVQNTAESRFGFRFLSCLPVTADT
CRGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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