NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS77009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77009.1 Public Homo sapiens 17 TBC1D3E 24 110 108 CCDS HistoryNCBI Gene:102723859Re-query CCDS DB by CCDS ID:77009.1Re-query CCDS DB by GeneID:102723859See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77009.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621587.2 ENSP00000483965.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621587.2Link to Ensembl Protein Viewer:ENSP00000483965.1Re-query CCDS DB by Nucleotide ID:ENST00000621587Re-query CCDS DB by Protein ID:ENSP00000483965
Original member Current member NCBI NM_001291466.2 NP_001278395.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001291466.2Link to Protein Sequence:NP_001278395.1Re-query CCDS DB by Nucleotide ID:NM_001291466Re-query CCDS DB by Protein ID:NP_001278395Link to BLAST:NP_001278395.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278395.1 549 A0A087X179 549 100% 0 0

Chromosomal Locations for CCDS 77009.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38129496 38129567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38129730 38129815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38131099 38131138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38131621 38131701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38132145 38132252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38132582 38132691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38133947 38133995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38134539 38134659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38135373 38135467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38135852 38135917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38136381 38136480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38136851 38137003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38137985 38138553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGGACGTGGTAGAGGTCGCGGGCAGTTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATACGAAA
AGGGACACCGAGCTGGGCTGCCAGAGGACAAGGGGCCTAAGCCTTTTCGAAGCTACAACAACAACGTCGA
TCATTTGGGGATTGTACATGAGACGGAGCTGCCTCCTCTGACTGCGCGGGAGGCGAAGCAAATTCGGCGG
GAGATCAGCCGAAAGAGCAAGTGGGTGGATATGCTGGGAGACTGGGAGAAATACAAAAGCAGCAGAAAGC
TCATAGATCAAGCGTACAAGGGAATGCCCATGAACATCCGGGGCCCGATGTGGTCAGTCCTCCTGAACAC
TGAGGAAATGAAGTTGAAAAACCCCGGAAGATACCAGATCATGAAGGAGAAGGGCAAGAAGTCATCTGAG
CACATCCAGCGCATCGACCGGGACGTAAGCGGGACATTAAGGAAGCATATATTCTTCAGGGATCGATACG
GAACCAAGCAGCGGGAACTACTCCACATCCTCCTGGCATATGAGGAGTACAACCCGGAGGTGGGCTACTG
CAGGGACCTGAGCCACATCGCCGCCTTGTTCCTCCTCTATCTTCCTGAGGAGGATGCATTCTGGGCACTG
GTGCAGCTGCTGGCCAGTGAGAGGCACTCCCTGCAGGGATTTCACAGCCCAAATGGCGGGACCGTCCAGG
GGCTCCAAGACCAACAGGAGCATGTGGTAGCCACGTCACAACCCAAGACCATGGGGCATCAGGACAAGAA
AGATCTATGTGGGCAGTGTTCCCCGTTAGGCTGCCTCATCCGGATATTGATTGACGGGATCTCTCTCGGG
CTCACCCTGCGCCTGTGGGACGTGTATCTGGTAGAAGGCGAACAGGCGCTGATGCCGATAACAAGAATCG
CCTTTAAGGTTCAGCAGAAGCGCCTCACGAAGACGTCCAGGTGTGGCCCGTGGGCACGTTTTTGCAACCG
GTTCGTTGATACCTGGGCCAGGGATGAGGACACTGTGCTCAAGCATCTTAGGGCCTCTATGAAGAAACTA
ACAAGAAAGAAGGGGGACCTGCCACCCCCAGCCAAACCCGAGCAAGGGTCGTCGGCATCCAGGCCTGTGC
CGGCTTCACGTGGCGGGAAGACCCTCTGCAAGGGGGACAGGCAGGCCCCTCCAGGCCCACCAGCCCGGTT
CCCGCGGCCCATTTGGTCAGCTTCCCCGCCACGGGCACCTCGTTCTTCCACACCCTGTCCTGGTGGGGCT
GTCCGGGAAGACACCTACCCTGTGGGCACTCAGGGTGTGCCCAGCCCGGCCCTGGCTCAGGGAGGACCTC
AGGGTTCCTGGAGATTCCTGCAGTGGAACTCCATGCCCCGCCTCCCAACGGACCTGGACGTAGAGGGCCC
TTGGTTCCGCCATTATGATTTCAGACAGAGCTGCTGGGTCCGTGCCATATCCCAGGAGGACCAGCTGGCC
CCCTGCTGGCAGGCTGAACACCCTGCGGAGCGGGTGAGATCGGCTTTCGCTGCACCCAGCACTGATTCCG
ACCAGGGCACCCCCTTCAGAGCTAGGGACGAACAGCAGTGTGCTCCCACCTCAGGGCCTTGCCTCTGCGG
CCTCCACTTGGAAAGTTCTCAGTTCCCTCCAGGCTTCTAG

Translation (549 aa):
MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRR
EISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSE
HIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWAL
VQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLG
LTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKL
TRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGA
VREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLA
PCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH